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Spg014858 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014858
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein RADIALIS-like 1
Genome locationscaffold3:34217756..34219142
RNA-Seq ExpressionSpg014858
SyntenySpg014858
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3486.05Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRGK
        MASMSS GS AWTP+QNKAFEKALAVYDQDTP+RWLNVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPY  S D +P KRG+
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRGK

XP_008447294.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]1.9e-3283.91Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPT--SIDHMPTKRG
        MASMSSHGS AWT +QNK FEKALA YDQDTP+RW+NVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPYPT  S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPT--SIDHMPTKRG

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]6.0e-3487.06Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG
        MASMSS GS AWTP+QNKAFEKALAVYDQDTP+RWLNVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPY  S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG

XP_022972527.1 protein RADIALIS-like 1 [Cucurbita maxima]1.7e-3385.88Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG
        MASMSS GS AWTP+QNKAFEKALAVYDQDTP+RWLNVAK VGEKTEEEVKRHYQLLL DVKHIESGNVPFPY  S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]7.1e-3587.06Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG
        MASMSSHGS AWT +QNK FEKALAVYDQDTP+RWLNVAKAVGEKTEEEVKRHYQLLL+DVKHIESGNVPFPYP+S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 29.3e-3383.91Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPT--SIDHMPTKRG
        MASMSSHGS AWT +QNK FEKALA YDQDTP+RW+NVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPYPT  S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPT--SIDHMPTKRG

A0A5D3D8F6 Protein RADIALIS-like 29.3e-3383.91Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPT--SIDHMPTKRG
        MASMSSHGS AWT +QNK FEKALA YDQDTP+RW+NVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPYPT  S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPT--SIDHMPTKRG

A0A6J1C6U4 protein RADIALIS-like 12.7e-3284.88Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTS-IDHMPTKRG
        MASMSS GS+AWT +QNKAFE+ALAVYDQDTP+RWLNVAKAVGEKTEEEVKRHYQLL+EDVKHIESG+VPFPY TS  D  PTKRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTS-IDHMPTKRG

A0A6J1GK35 protein RADIALIS-like 12.9e-3487.06Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG
        MASMSS GS AWTP+QNKAFEKALAVYDQDTP+RWLNVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPY  S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG

A0A6J1I517 protein RADIALIS-like 18.4e-3485.88Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG
        MASMSS GS AWTP+QNKAFEKALAVYDQDTP+RWLNVAK VGEKTEEEVKRHYQLLL DVKHIESGNVPFPY  S D +P KRG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.2e-2268.42Show/hide
Query:  ASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPTS
        +SMSS  S +WT  QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL++D+  IE+G+VPFP Y TS
Subjt:  ASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPTS

Q1A173 Protein RADIALIS-like 63.3e-1956.38Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPT------SIDHMPTKRGKS
        MAS S    + WT  QNK FE+ALAVYD+DTP RW NVAKAVG KT EEVKRHY +L+ED+ +IE+G VP P Y T      SI+   T++ K+
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPT------SIDHMPTKRGKS

Q58FS3 Transcription factor RADIALIS1.5e-1959.04Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPTSIDHMPT
        MAS    G   W+  +NKAFE+ALAVYD+DTP RW NVA+AV  +T EEVK+HY++L+ED+K+IESG VPFP Y T+  +M T
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPTSIDHMPT

Q8GW75 Protein RADIALIS-like 53.0e-2057.65Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG
        MAS S   S++WT  QNK FE+ALAVYD+DTP RW NVAKAVG K+ EEVKRHY +L+ED+ +IE   VP P   ++D     RG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG

Q9SIJ5 Protein RADIALIS-like 21.2e-2170Show/hide
Query:  SMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP
        SMSS+GS +WT  QNKAFE+ALAVYDQDTP RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP
Subjt:  SMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.1e-2157.65Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG
        MAS S   S++WT  QNK FE+ALAVYD+DTP RW NVAKAVG K+ EEVKRHY +L+ED+ +IE   VP P   ++D     RG
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDHMPTKRG

AT1G75250.1 RAD-like 63.1e-2065.28Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP
        MAS S    + WT  QNK FE+ALAVYD+DTP RW NVAKAVG KT EEVKRHY +L+ED+ +IE+G VP P
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP

AT1G75250.2 RAD-like 62.4e-2056.38Show/hide
Query:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPT------SIDHMPTKRGKS
        MAS S    + WT  QNK FE+ALAVYD+DTP RW NVAKAVG KT EEVKRHY +L+ED+ +IE+G VP P Y T      SI+   T++ K+
Subjt:  MASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPT------SIDHMPTKRGKS

AT2G21650.1 Homeodomain-like superfamily protein8.6e-2370Show/hide
Query:  SMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP
        SMSS+GS +WT  QNKAFE+ALAVYDQDTP RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP
Subjt:  SMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP

AT4G39250.1 RAD-like 12.3e-2368.42Show/hide
Query:  ASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPTS
        +SMSS  S +WT  QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL++D+  IE+G+VPFP Y TS
Subjt:  ASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFP-YPTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGAGCGTAGGTGGCAAGCAGTTATATGGATACGGTGCTTTAACCCGTAGACGCTTCTCCAGCTCTCACAGAACTATATTATATTATCAAATGGCTTCAATGTCCTC
TCATGGATCAACTGCGTGGACTCCATTGCAAAACAAGGCGTTTGAGAAGGCTTTGGCAGTGTATGATCAAGACACTCCTCAGAGATGGCTCAATGTTGCAAAGGCTGTTG
GTGAGAAAACCGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTCTTGAGGATGTCAAACACATTGAGTCTGGCAATGTTCCTTTCCCATATCCAACCTCGATCGATCAT
ATGCCGACGAAAAGAGGTAAATCTAAACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGAGCGTAGGTGGCAAGCAGTTATATGGATACGGTGCTTTAACCCGTAGACGCTTCTCCAGCTCTCACAGAACTATATTATATTATCAAATGGCTTCAATGTCCTC
TCATGGATCAACTGCGTGGACTCCATTGCAAAACAAGGCGTTTGAGAAGGCTTTGGCAGTGTATGATCAAGACACTCCTCAGAGATGGCTCAATGTTGCAAAGGCTGTTG
GTGAGAAAACCGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTCTTGAGGATGTCAAACACATTGAGTCTGGCAATGTTCCTTTCCCATATCCAACCTCGATCGATCAT
ATGCCGACGAAAAGAGGTAAATCTAAACCCTAA
Protein sequenceShow/hide protein sequence
MRSVGGKQLYGYGALTRRRFSSSHRTILYYQMASMSSHGSTAWTPLQNKAFEKALAVYDQDTPQRWLNVAKAVGEKTEEEVKRHYQLLLEDVKHIESGNVPFPYPTSIDH
MPTKRGKSKP