; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg014872 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014872
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpre-mRNA-splicing factor ISY1 homolog
Genome locationscaffold3:47006138..47009140
RNA-Seq ExpressionSpg014872
SyntenySpg014872
Gene Ontology termsGO:0000350 - generation of catalytic spliceosome for second transesterification step (biological process)
GO:0000389 - mRNA 3'-splice site recognition (biological process)
GO:0000974 - Prp19 complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
GO:0071020 - post-spliceosomal complex (cellular component)
InterPro domainsIPR009360 - Pre-mRNA-splicing factor Isy1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461190.1 PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Cucumis melo]1.7e-2876.15Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEERMR E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
XP_011659495.1 pre-mRNA-splicing factor ISY1 homolog [Cucumis sativus]1.7e-2876.15Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEERMR E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
XP_022152151.1 pre-mRNA-splicing factor ISY1 homolog [Momordica charantia]4.6e-2977.06Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEERMRTE             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
XP_022960451.1 pre-mRNA-splicing factor ISY1 homolog [Cucurbita moschata]1.1e-2774.31Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEER+R E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEER+R
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
XP_023004198.1 pre-mRNA-splicing factor ISY1 homolog [Cucurbita maxima]1.1e-2774.31Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEER+R E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEER+R
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
TrEMBL top hitse value%identityAlignment
A0A0A0KBN6 Uncharacterized protein8.4e-2976.15Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEERMR E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
A0A1S3CE48 pre-mRNA-splicing factor ISY1 homolog8.4e-2976.15Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEERMR E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
A0A5D3CH05 Pre-mRNA-splicing factor ISY1-like protein8.4e-2976.15Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEERMR E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
A0A6J1DGR8 pre-mRNA-splicing factor ISY1 homolog2.2e-2977.06Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEERMRTE             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
A0A6J1KYR8 pre-mRNA-splicing factor ISY1 homolog5.5e-2874.31Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDGVLERVE PSEER+R E             EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEER+R
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTE-------------EAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        EREMKENL+
Subjt:  EREMKENLE
SwissProt top hitse value%identityAlignment
Q54N41 Pre-mRNA-splicing factor ISY1 homolog3.1e-0463.64Show/hide
Query:  TRYDIYKRIDASYYGYRDDEDGVLERVEAPSEE
        TR D+YK ID+ YYGYRDDEDG LE +E   E+
Subjt:  TRYDIYKRIDASYYGYRDDEDGVLERVEAPSEE
Arabidopsis top hitse value%identityAlignment
AT3G18790.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink).3.1e-1553.21Show/hide
Query:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPS---------EERMRTEEAKRAVKSG--EVASV--VNVAAKEVLFEEEEEVVEEERKR
        +F    +L+   TRYDIYKRIDASYYGYRDDEDG+LE++E  S         EE  R +E ++  + G  EV SV     AA+EVLFEEEE+VVEEER  
Subjt:  VFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPS---------EERMRTEEAKRAVKSG--EVASV--VNVAAKEVLFEEEEEVVEEERKR

Query:  EREMKENLE
        ERE +E  E
Subjt:  EREMKENLE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGATGTTCCCGCTTCCAAAATGGTGAACTTTGGATTGTCCGGAAATTTGTTGACAAACATTCATGTTGCCTTGATCCAACTGGTTCCTCTCCAGCCAATCAAATT
GCCTCATCAATCGCCTTCTCTATCTTCCCCTTCTCCGCCGGATTCATCTTTCCGGCCAATTTCTCATCCCTCACGGTGTTCCGCATGTTATAAGCATAATTCTCCAAGGC
GTTCTTCGCTTCAACCTTCTTCTTCACCTGTTCATCCTCCGCCTCCTGCACCATCCTCTCAATCTCCCCTTGTCGTTGGTAATGGTGATCGTGTTCTTAACTCCGGCTGT
CTTGTTGTCCTCCGCCGTGACGTTCAGAATCCCATTGCCGTCGATGTCGAAACAGACGTTGATTTGCGAGCTAGAAAGTATCCTCAACAGACGGAATCAGGGTTTCTTCC
GGTGCGATTCGTCGACCAAATTTTGATCGGGAAATTGTTCGGCGGCCAAATTCTTCAGGTGCAGCAGACCTTTCTTGATTTCTTTCGTCTCCTTGATGTTCTTGTTTGTC
TAGATTTAATGCCAACTGCTGAGTGTCTTATTAGTAGTTTGTCATTTGTTCGTGGATTCATGGCTTTAGAAATGAGAGGATGTACGCAGTTGATACAAAATCTGATTATT
GGTAGGGTGGCTGTATTTTCAATTGGCACGAAGCTGCAAGTGAGCTGGACTCGATATGACATATACAAGAGGATTGATGCAAGCTACTATGGCTACAGGGATGACGAGGA
TGGGGTTTTGGAAAGAGTGGAAGCTCCAAGTGAAGAGCGTATGAGAACCGAGGAAGCGAAGAGGGCAGTGAAGAGTGGGGAGGTAGCCAGTGTGGTGAATGTTGCAGCAA
AGGAGGTACTATTTGAAGAGGAGGAAGAGGTTGTTGAAGAAGAGAGGAAGAGAGAGAGGGAAATGAAGGAGAATTTGGAACTGATGAAAAGGAGATTGAGAAGATGGAAC
AAGTTTCTTCAAGCAGAGCTTTCCCTCTTGCCAACCCGTAAGTCCACTGTGATATGCAATCTGGATAGTGTTGCGTTTGATCTTGCCAACCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGATGTTCCCGCTTCCAAAATGGTGAACTTTGGATTGTCCGGAAATTTGTTGACAAACATTCATGTTGCCTTGATCCAACTGGTTCCTCTCCAGCCAATCAAATT
GCCTCATCAATCGCCTTCTCTATCTTCCCCTTCTCCGCCGGATTCATCTTTCCGGCCAATTTCTCATCCCTCACGGTGTTCCGCATGTTATAAGCATAATTCTCCAAGGC
GTTCTTCGCTTCAACCTTCTTCTTCACCTGTTCATCCTCCGCCTCCTGCACCATCCTCTCAATCTCCCCTTGTCGTTGGTAATGGTGATCGTGTTCTTAACTCCGGCTGT
CTTGTTGTCCTCCGCCGTGACGTTCAGAATCCCATTGCCGTCGATGTCGAAACAGACGTTGATTTGCGAGCTAGAAAGTATCCTCAACAGACGGAATCAGGGTTTCTTCC
GGTGCGATTCGTCGACCAAATTTTGATCGGGAAATTGTTCGGCGGCCAAATTCTTCAGGTGCAGCAGACCTTTCTTGATTTCTTTCGTCTCCTTGATGTTCTTGTTTGTC
TAGATTTAATGCCAACTGCTGAGTGTCTTATTAGTAGTTTGTCATTTGTTCGTGGATTCATGGCTTTAGAAATGAGAGGATGTACGCAGTTGATACAAAATCTGATTATT
GGTAGGGTGGCTGTATTTTCAATTGGCACGAAGCTGCAAGTGAGCTGGACTCGATATGACATATACAAGAGGATTGATGCAAGCTACTATGGCTACAGGGATGACGAGGA
TGGGGTTTTGGAAAGAGTGGAAGCTCCAAGTGAAGAGCGTATGAGAACCGAGGAAGCGAAGAGGGCAGTGAAGAGTGGGGAGGTAGCCAGTGTGGTGAATGTTGCAGCAA
AGGAGGTACTATTTGAAGAGGAGGAAGAGGTTGTTGAAGAAGAGAGGAAGAGAGAGAGGGAAATGAAGGAGAATTTGGAACTGATGAAAAGGAGATTGAGAAGATGGAAC
AAGTTTCTTCAAGCAGAGCTTTCCCTCTTGCCAACCCGTAAGTCCACTGTGATATGCAATCTGGATAGTGTTGCGTTTGATCTTGCCAACCCGTAA
Protein sequenceShow/hide protein sequence
MLDVPASKMVNFGLSGNLLTNIHVALIQLVPLQPIKLPHQSPSLSSPSPPDSSFRPISHPSRCSACYKHNSPRRSSLQPSSSPVHPPPPAPSSQSPLVVGNGDRVLNSGC
LVVLRRDVQNPIAVDVETDVDLRARKYPQQTESGFLPVRFVDQILIGKLFGGQILQVQQTFLDFFRLLDVLVCLDLMPTAECLISSLSFVRGFMALEMRGCTQLIQNLII
GRVAVFSIGTKLQVSWTRYDIYKRIDASYYGYRDDEDGVLERVEAPSEERMRTEEAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKREREMKENLELMKRRLRRWN
KFLQAELSLLPTRKSTVICNLDSVAFDLANP