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Spg014911 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014911
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold3:46416822..46418030
RNA-Seq ExpressionSpg014911
SyntenySpg014911
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7823154.1 putative WRKY transcription factor 31 [Senna tora]5.0e-0639.76Show/hide
Query:  WRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLI
        W++N D +   NP  +     IG I R+  G+     S Y+    T    ELWAI+ G+K+A +LGC+ L +ESDSL+A NL+
Subjt:  WRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLI

KAF7830619.1 Trimethylguanosine synthase [Senna tora]8.5e-0636.59Show/hide
Query:  LIYRVGLKARG-------PHGDLV--SNATAKGGAQNAATWRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLK
        +I R GL A          H  L+  +N   K     A  W++N D +   NP  +     IG I RD  GS     SSYI    T    ELWAI+ GL+
Subjt:  LIYRVGLKARG-------PHGDLV--SNATAKGGAQNAATWRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLK

Query:  MAISLGCERLIVESDSLMAINLI
        +A+SL C  + VESDSL+A+  +
Subjt:  MAISLGCERLIVESDSLMAINLI

KAF7841164.1 reverse transcriptase [Senna tora]1.9e-0540.23Show/hide
Query:  WRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKS
        W++N D ++  NP  +     IG I RD  G+     S +I  D T   V+LWAI  GLK+A  L C  L +E+DSL+A NL+   S
Subjt:  WRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKS

KAF7844846.1 reverse transcriptase [Senna tora]5.0e-0640.96Show/hide
Query:  WRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLI
        W++N + +   NP  +     IG + R+  G+     SS+I  D T    ELWAI  GL MA+SL C  + VESDSL+A+NL+
Subjt:  WRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLI

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.1e-0536Show/hide
Query:  RMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW
        ++NVDA+W  +    P SSG  AI RD  GS++    S ID  Y  P  E + + +GL++   +  +++IV+SD   AI+L  K       V  +LE IW
Subjt:  RMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase1.7e-0433.96Show/hide
Query:  AQNAATWRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVE
        A +  TW++N DAS+     S    +G+G + RD  G I  + +  +       + E+ AI  G ++A+  G  R I+ESDSL+AI+ I KK   L E  
Subjt:  AQNAATWRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVE

Query:  AFLELI
          +E I
Subjt:  AFLELI

A0A4V6ABH7 RNase H domain-containing protein2.9e-0438.04Show/hide
Query:  SSGIGAIFRDLAG-SIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIWAMIPSFRE
        ++GIG +FRD  G +I G  S     D     VELWAI  GL +A++L  + + VESDSL A+N I ++    G+ +A L+ I  ++  F++
Subjt:  SSGIGAIFRDLAG-SIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIWAMIPSFRE

A0A6P5RF39 uncharacterized protein LOC1107447641.7e-0435Show/hide
Query:  RMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW
        ++NVD +W  N         +G + RD  G++ G  SS+  V  +   VE  AI EGLK+A ++  + ++VESDS + I  I+KK   L  +   L  IW
Subjt:  RMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLMAINLITKKSDQLGEVEAFLELIW

A0A803P6S3 Uncharacterized protein1.3e-0430.16Show/hide
Query:  RGPHGDLVSNATAKGGAQNAATWRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLM
        RG  G     +  +     A   ++NVDA  G     +   SG+G + RD AG +R   ++ +        +EL AI  GL++ I    E+  +ESD L 
Subjt:  RGPHGDLVSNATAKGGAQNAATWRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVESDSLM

Query:  AINLITKKSDQLGEVEAFLELIWAMI
        A+NLI KK D   +++  L  I +++
Subjt:  AINLITKKSDQLGEVEAFLELIWAMI

A0A803QE56 Uncharacterized protein1.3e-0427.56Show/hide
Query:  HGDLVSNATAKGGAQ--NAATWRMNVDA------SWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVE
        HG  V+    +G  +  +   W++NVDA       W          SG+  + +D +G +   +S+ +  +Y   + EL AI  GL+  I  G ++  +E
Subjt:  HGDLVSNATAKGGAQ--NAATWRMNVDA------SWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIVE

Query:  SDSLMAINLITKKSDQLGEVEAFLELI
        SD L AI LI  K +   +++  L+ I
Subjt:  SDSLMAINLITKKSDQLGEVEAFLELI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCGTTTTGTGCGGAGCTTATTTATAGAGTGGGCCTGAAGGCGCGTGGACCCCATGGAGACTTGGTGTCCAATGCGACGGCGAAAGGTGGCGCGCAAAATGCGGC
CACGTGGAGGATGAATGTGGATGCTTCGTGGGGCACAAATCCTCCCTCATATCCTCCCTCATCTGGAATAGGAGCCATTTTTAGGGATTTAGCAGGTTCTATCAGAGGGA
CAACAAGCTCTTACATTGATGTGGATTATACGGGTCCAAATGTTGAATTATGGGCCATAGCTGAAGGCTTGAAGATGGCTATAAGTTTGGGCTGTGAAAGATTGATAGTG
GAATCTGATAGTCTAATGGCCATAAATCTCATTACAAAAAAATCAGATCAATTGGGAGAAGTAGAAGCTTTTCTAGAATTGATTTGGGCAATGATCCCATCATTTAGAGA
GAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCGTTTTGTGCGGAGCTTATTTATAGAGTGGGCCTGAAGGCGCGTGGACCCCATGGAGACTTGGTGTCCAATGCGACGGCGAAAGGTGGCGCGCAAAATGCGGC
CACGTGGAGGATGAATGTGGATGCTTCGTGGGGCACAAATCCTCCCTCATATCCTCCCTCATCTGGAATAGGAGCCATTTTTAGGGATTTAGCAGGTTCTATCAGAGGGA
CAACAAGCTCTTACATTGATGTGGATTATACGGGTCCAAATGTTGAATTATGGGCCATAGCTGAAGGCTTGAAGATGGCTATAAGTTTGGGCTGTGAAAGATTGATAGTG
GAATCTGATAGTCTAATGGCCATAAATCTCATTACAAAAAAATCAGATCAATTGGGAGAAGTAGAAGCTTTTCTAGAATTGATTTGGGCAATGATCCCATCATTTAGAGA
GAGATAA
Protein sequenceShow/hide protein sequence
MRAFCAELIYRVGLKARGPHGDLVSNATAKGGAQNAATWRMNVDASWGTNPPSYPPSSGIGAIFRDLAGSIRGTTSSYIDVDYTGPNVELWAIAEGLKMAISLGCERLIV
ESDSLMAINLITKKSDQLGEVEAFLELIWAMIPSFRER