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Spg014916 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014916
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationscaffold3:48179518..48180277
RNA-Seq ExpressionSpg014916
SyntenySpg014916
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593467.1 30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4693.4Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  ILSISV
         L  S+
Subjt:  ILSISV

XP_022964008.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata]8.2e-4796.04Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

XP_023000403.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]8.2e-4796.04Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

XP_023513636.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]2.4e-4695.05Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSK+KVAEA AG+LGIPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]1.4e-4696.04Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEAGAGELGIPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

TrEMBL top hitse value%identityAlignment
A0A5A7UW29 30S ribosomal protein S17, chloroplastic5.3e-4493.07Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAG-AGELGIPLESQQ
        MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SK+K AE G  GELGIPLESQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAG-AGELGIPLESQQ

Query:  Q
        +
Subjt:  Q

A0A6J1GQP3 30S ribosomal protein S17, chloroplastic-like1.5e-4695.05Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEAGAGELGIPLESQ+Q
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

A0A6J1HJK0 30S ribosomal protein S17, chloroplastic4.0e-4796.04Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

A0A6J1JVM9 30S ribosomal protein S17, chloroplastic-like1.7e-4594.06Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEAG GEL IPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

A0A6J1KMI9 30S ribosomal protein S17, chloroplastic4.0e-4796.04Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        M+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEA AG+LGIPLESQQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Query:  I
        +
Subjt:  I

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic2.6e-3576Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGE-LGIPLESQQ
        M+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV AR +++  AEAG  E LG+PLESQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGE-LGIPLESQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)5.3e-3367Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        M++++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SK+      +GELGIPL+SQQ+
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

P82137 30S ribosomal protein S17, chloroplastic2.6e-3573.27Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KQKVAEAGAGELGIPLES
        MRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD+V+L+KCRPISK KTFLA+    R S   + K  +A + ELGIPLES
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KQKVAEAGAGELGIPLES

Query:  Q
        Q
Subjt:  Q

Q9TJN6 30S ribosomal protein S17, chloroplastic3.4e-2775.31Show/hide
Query:  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQK
        R L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FLAIP+P R++++K
Subjt:  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQK

Q9ZST1 30S ribosomal protein S17, chloroplastic5.2e-2865.66Show/hide
Query:  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ
        + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + RPISK K FLA+P+P R++++K       +L  PL+SQ Q
Subjt:  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQ

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S171.8e-3676Show/hide
Query:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGE-LGIPLESQQ
        M+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV AR +++  AEAG  E LG+PLESQQ
Subjt:  MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGE-LGIPLESQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTCCCTGCAAGGCCGCGTCGTCTGCGCCACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAA
GAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGCCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGG
TTCCGGCGAGGAATTCGAAGCAGAAAGTGGCGGAAGCTGGGGCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAACAGATTCTCTCTATCTCTGTGTTTGGTGTAGAA
AATGGTGACATTTTCATTATAGTGCTCGTTCCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGTCCCTGCAAGGCCGCGTCGTCTGCGCCACCAACGACAAGACCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAA
GAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGCCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGG
TTCCGGCGAGGAATTCGAAGCAGAAAGTGGCGGAAGCTGGGGCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAACAGATTCTCTCTATCTCTGTGTTTGGTGTAGAA
AATGGTGACATTTTCATTATAGTGCTCGTTCCATTTTAG
Protein sequenceShow/hide protein sequence
MRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAGAGELGIPLESQQQILSISVFGVE
NGDIFIIVLVPF