; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg014935 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014935
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold3:31994587..31997985
RNA-Seq ExpressionSpg014935
SyntenySpg014935
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.1e-0553.23Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYHP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]9.4e-1448.89Show/hide
Query:  VVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMAQLPQYGEVDIIEECS
        + TPM ELF+IL  +GY+ VE L  +L  K YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV    A   Q   ++++E+ S
Subjt:  VVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMAQLPQYGEVDIIEECS

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]4.2e-1445.26Show/hide
Query:  SKKDMIKAHKQEREKRLARLGSRESKYQMNIIPHLHDTFIFAGIIHPESQDPTVM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
        S+ D+I+    E+ KRL+R  + E  Y   I+P L  +F  AG IH E  + +V+ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  SKKDMIKAHKQEREKRLARLGSRESKYQMNIIPHLHDTFIFAGIIHPESQDPTVM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]5.5e-1439.85Show/hide
Query:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   + TP  ELF+IL  +GY+ VE L  +L  K YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHKQER
            A   Q   ++++E+ S  +    A K +R
Subjt:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHKQER

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.4e-0944.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YHPLYNIPVEQHPFPFFKN-DQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K   Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YHPLYNIPVEQHPFPFFKN-DQVPV

Query:  H
        +
Subjt:  H

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]7.2e-1437.69Show/hide
Query:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   + TPM  LF+IL  +GY+ +E L  D+  + YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHK
        +Q      Q   +D++E  S+ +    A+K
Subjt:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]8.5e-1543.33Show/hide
Query:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   + TPM ELF+IL  +GY+ VE L  +L  K YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMAQLPQYGEVDIIEECS
            A   Q   ++I+E+ S
Subjt:  SQKMAQLPQYGEVDIIEECS

TrEMBL top hitse value%identityAlignment
A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.0e-0553.23Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYHP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYHP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222314.6e-1448.89Show/hide
Query:  VVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMAQLPQYGEVDIIEECS
        + TPM ELF+IL  +GY+ VE L  +L  K YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV    A   Q   ++++E+ S
Subjt:  VVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMAQLPQYGEVDIIEECS

A0A6J1DR66 uncharacterized protein LOC1110227912.0e-1445.26Show/hide
Query:  SKKDMIKAHKQEREKRLARLGSRESKYQMNIIPHLHDTFIFAGIIHPESQDPTVM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
        S+ D+I+    E+ KRL+R  + E  Y   I+P L  +F  AG IH E  + +V+ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  SKKDMIKAHKQEREKRLARLGSRESKYQMNIIPHLHDTFIFAGIIHPESQDPTVM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK

A0A6J1DZ90 Ribonuclease H2.7e-1439.85Show/hide
Query:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   + TP  ELF+IL  +GY+ VE L  +L  K YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHKQER
            A   Q   ++++E+ S  +    A K +R
Subjt:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHKQER

A0A6J1DZ90 Ribonuclease H1.2e-0944.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YHPLYNIPVEQHPFPFFKN-DQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K   Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YHPLYNIPVEQHPFPFFKN-DQVPV

Query:  H
        +
Subjt:  H

A0A6J1DZ90 Ribonuclease H3.5e-1437.69Show/hide
Query:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   + TPM  LF+IL  +GY+ +E L  D+  + YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHK
        +Q      Q   +D++E  S+ +    A+K
Subjt:  SQKMAQLPQYGEVDIIEECSSKKDMIKAHK

A0A6J1E2J7 Ribonuclease H4.1e-1543.33Show/hide
Query:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   + TPM ELF+IL  +GY+ VE L  +L  K YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNDQVPVHNQPGFSLPTE--SVVTPMGELFKILSSNGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMAQLPQYGEVDIIEECS
            A   Q   ++I+E+ S
Subjt:  SQKMAQLPQYGEVDIIEECS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAAAGAGGTAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAATAGAGGGCACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGACCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCCACAGAGAGCGTAGTGACTCCCATGGGAGAACTATTCAAAATATTATCCAGT
AATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAAAGCATACGATGACAGTTTGATGTGTTCCTATCACATTGGGGCAAAAGGGCATTCTATCGACCA
ATGTCCTCATTTTCGTTTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGCTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAG
AATGTTCAAGCAAAAAAGATATGATTAAAGCACACAAGCAGGAGAGAGAAAAACGACTGGCTAGATTGGGGAGCCGTGAGTCAAAGTATCAAATGAATATCATTCCTCAT
CTTCATGATACCTTCATCTTTGCTGGAATAATTCATCCAGAATCTCAAGACCCTACAGTCATGGCTATAATCGAACAGAAGAAAGAAGCCGGTCCCTTGGTTTATCTGTG
CCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAAAGAGGTAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAATAGAGGGCACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGACCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCCACAGAGAGCGTAGTGACTCCCATGGGAGAACTATTCAAAATATTATCCAGT
AATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAAAGCATACGATGACAGTTTGATGTGTTCCTATCACATTGGGGCAAAAGGGCATTCTATCGACCA
ATGTCCTCATTTTCGTTTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGCTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAG
AATGTTCAAGCAAAAAAGATATGATTAAAGCACACAAGCAGGAGAGAGAAAAACGACTGGCTAGATTGGGGAGCCGTGAGTCAAAGTATCAAATGAATATCATTCCTCAT
CTTCATGATACCTTCATCTTTGCTGGAATAATTCATCCAGAATCTCAAGACCCTACAGTCATGGCTATAATCGAACAGAAGAAAGAAGCCGGTCCCTTGGTTTATCTGTG
CCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYHPLYNIPVEQHPFPFFKNDQVPVHNQPGFSLPTESVVTPMGELFKILSS
NGYIGVERLQLDLGVKAYDDSLMCSYHIGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMAQLPQYGEVDIIEECSSKKDMIKAHKQEREKRLARLGSRESKYQMNIIPH
LHDTFIFAGIIHPESQDPTVMAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK