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Spg014952 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014952
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:39155215..39157227
RNA-Seq ExpressionSpg014952
SyntenySpg014952
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044242.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]1.7e-2153.68Show/hide
Query:  ILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWR
        ILLF   ++AM   L + I LFEW SG  VNW KST+ G+N+ ++E+  MA KL CKVE LPF YLGL LGG+P+   FW+P++D++ +KLDRW+
Subjt:  ILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWR

TYK01565.1 hypothetical protein E5676_scaffold451G001420 [Cucumis melo var. makuwa]7.8e-1950Show/hide
Query:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWRK
        D  LLFC Y+  M + L QT+  FEW SG  VNW KS +CGIN+  +E+  MA  L  KV++LP  YLGL LGG+ K  + WQ V DK+  KLD+W++
Subjt:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWRK

TYK06397.1 hypothetical protein E5676_scaffold163G00940 [Cucumis melo var. makuwa]3.4e-2254.74Show/hide
Query:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDR
        DD +LFCK +++M   L +TI  FEW SG  VNW KS +  IN+ ++E++LMA KL CK++ LPF YLGL LGG+P+   FWQPVVD++ +KLDR
Subjt:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDR

XP_038880332.1 uncharacterized protein LOC120071973 [Benincasa hispida]1.2e-2457.73Show/hide
Query:  DILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWRK
        D LLFCKY D M   L +TI +FEW S   VNW KS ICGINI+ N++  +A +L CKV++LP  YLGL LGG+PK+ +FWQPV+DK+  KLD+WR+
Subjt:  DILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWRK

XP_038889274.1 uncharacterized protein LOC120079176 [Benincasa hispida]3.8e-2150.52Show/hide
Query:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWR
        D  LLFCKY+  M   L QT+  F+W SG  VNW KS + GIN+  NE+   A  L CK ++LPF+YLGL LGG+ K  +FWQPV++    KLD+W+
Subjt:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWR

TrEMBL top hitse value%identityAlignment
A0A5A7TLN3 Transposon Tf2-9 polyprotein8.2e-2253.68Show/hide
Query:  ILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWR
        ILLF   ++AM   L + I LFEW SG  VNW KST+ G+N+ ++E+  MA KL CKVE LPF YLGL LGG+P+   FW+P++D++ +KLDRW+
Subjt:  ILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWR

A0A5D3BQV1 Reverse transcriptase domain-containing protein3.8e-1950Show/hide
Query:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWRK
        D  LLFC Y+  M + L QT+  FEW SG  VNW KS +CGIN+  +E+  MA  L  KV++LP  YLGL LGG+ K  + WQ V DK+  KLD+W++
Subjt:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWRK

A0A5D3C3J5 Reverse transcriptase domain-containing protein1.6e-2254.74Show/hide
Query:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDR
        DD +LFCK +++M   L +TI  FEW SG  VNW KS +  IN+ ++E++LMA KL CK++ LPF YLGL LGG+P+   FWQPVVD++ +KLDR
Subjt:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDR

A0A5D3C786 Putative ribonuclease H protein1.8e-1645.88Show/hide
Query:  LLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDK
        ++FCK+++ M   L +T+ +FE  SG  + W KS+ICGIN++++++      L CKVE++P  YLGL LGG+PKS  F QP++DK
Subjt:  LLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDK

A0A5D3DC03 Uncharacterized protein1.6e-1744.44Show/hide
Query:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGG----------HPKSPTFWQPVVDKIL
        DD LLF KY+++M   L  TIALFEW SG  +NW KS +CG+N++ +E+ LMAEK+ C  EN+PF YLGL LGG                FW+      +
Subjt:  DDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGG----------HPKSPTFWQPVVDKIL

Query:  RKLDRWRK
          L +W K
Subjt:  RKLDRWRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTGTGTATGGCAAACTGCAGGCCAAACATCTCGAAGAACGCATCCCAAACCGAACTAGCAAAATCACATCTCGAAGAACGTGTATTTGAGCTCTCTTTTGCATT
TTGTGATATTCCATGCTGTGTTGGAGGTGATTTTAACATAACTCATTCAATTCATGAAAGGATACCTTGTGGGAAACAAACAAAGGAGATGCGGCAATTTAACAGATTAA
TTAAAGAAACGGGTCTTATGGAAATTCCACTTTCCAATGGAAAATTTACATGGTCAAAGCTAGGGGATGATAGTTTCCAATCTTTCTCTTATTGCACCATCTGGACAACA
CTTAAAGATGACATCTTGCTGTTTTGCAAATATAATGATGCTATGTTTAATGTTTTATCTCAAACTATTGCCTTATTTGAATGGAGCTCGGGTTTGATGGTGAATTGGGG
AAAATCTACAATTTGTGGCATAAATATTCAAAATAATGAGGTGGCTCTTATGGCTGAAAAGTTGACTTGCAAGGTGGAAAATCTTCCTTTTAATTACCTTGGACTATCCC
TTGGAGGTCATCCTAAATCGCCAACTTTTTGGCAACCAGTTGTAGATAAAATCCTTAGGAAATTGGATAGGTGGAGGAAGGATGACTCTTTCCCTTATGCGATCAAAGCC
CTTTTGTTCAAGTTATGGTTGGAGAGGAATTCAAGAACTTTTATAATAAAAGTCTTTCATGGGTCTCTGGTAGGCTTTTTAACACTGCATTCAACCATTGGTAAATGTGG
AGGAGAGACCCTTAGAGTCAGAGTCAAAATTGAAGTCCATGAACCGCTAAAAAGGGCAGTCAAGATCAAAGTGGGAACCATGGTAGAGGAGGAATGGATACAAGTCAAAT
ACGAAAAGTTACCAGACTATTGTTATGGGTGCGGGAGGATTGGCCATCATATGAGAGACTGTGAAGAGGTGGAAAAAGAAAGCGATGAAACTATTCAGTTCGGGCCATGG
CTAAAATATGATTCACCCATTGAAACAAGGGGTAAAGATAACCAAGAGATAGGAAAAGGAACACCCAGACGGGGTAGGGGACGCGGAGTTAACAGAGGGACGTTTTTTAA
CAATGGACATGGCAAACATTCTGGAAGCTTCCAGCTGTCAGAAGAACTTGGCTACCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCTGTGTATGGCAAACTGCAGGCCAAACATCTCGAAGAACGCATCCCAAACCGAACTAGCAAAATCACATCTCGAAGAACGTGTATTTGAGCTCTCTTTTGCATT
TTGTGATATTCCATGCTGTGTTGGAGGTGATTTTAACATAACTCATTCAATTCATGAAAGGATACCTTGTGGGAAACAAACAAAGGAGATGCGGCAATTTAACAGATTAA
TTAAAGAAACGGGTCTTATGGAAATTCCACTTTCCAATGGAAAATTTACATGGTCAAAGCTAGGGGATGATAGTTTCCAATCTTTCTCTTATTGCACCATCTGGACAACA
CTTAAAGATGACATCTTGCTGTTTTGCAAATATAATGATGCTATGTTTAATGTTTTATCTCAAACTATTGCCTTATTTGAATGGAGCTCGGGTTTGATGGTGAATTGGGG
AAAATCTACAATTTGTGGCATAAATATTCAAAATAATGAGGTGGCTCTTATGGCTGAAAAGTTGACTTGCAAGGTGGAAAATCTTCCTTTTAATTACCTTGGACTATCCC
TTGGAGGTCATCCTAAATCGCCAACTTTTTGGCAACCAGTTGTAGATAAAATCCTTAGGAAATTGGATAGGTGGAGGAAGGATGACTCTTTCCCTTATGCGATCAAAGCC
CTTTTGTTCAAGTTATGGTTGGAGAGGAATTCAAGAACTTTTATAATAAAAGTCTTTCATGGGTCTCTGGTAGGCTTTTTAACACTGCATTCAACCATTGGTAAATGTGG
AGGAGAGACCCTTAGAGTCAGAGTCAAAATTGAAGTCCATGAACCGCTAAAAAGGGCAGTCAAGATCAAAGTGGGAACCATGGTAGAGGAGGAATGGATACAAGTCAAAT
ACGAAAAGTTACCAGACTATTGTTATGGGTGCGGGAGGATTGGCCATCATATGAGAGACTGTGAAGAGGTGGAAAAAGAAAGCGATGAAACTATTCAGTTCGGGCCATGG
CTAAAATATGATTCACCCATTGAAACAAGGGGTAAAGATAACCAAGAGATAGGAAAAGGAACACCCAGACGGGGTAGGGGACGCGGAGTTAACAGAGGGACGTTTTTTAA
CAATGGACATGGCAAACATTCTGGAAGCTTCCAGCTGTCAGAAGAACTTGGCTACCATTGA
Protein sequenceShow/hide protein sequence
MLLCMANCRPNISKNASQTELAKSHLEERVFELSFAFCDIPCCVGGDFNITHSIHERIPCGKQTKEMRQFNRLIKETGLMEIPLSNGKFTWSKLGDDSFQSFSYCTIWTT
LKDDILLFCKYNDAMFNVLSQTIALFEWSSGLMVNWGKSTICGINIQNNEVALMAEKLTCKVENLPFNYLGLSLGGHPKSPTFWQPVVDKILRKLDRWRKDDSFPYAIKA
LLFKLWLERNSRTFIIKVFHGSLVGFLTLHSTIGKCGGETLRVRVKIEVHEPLKRAVKIKVGTMVEEEWIQVKYEKLPDYCYGCGRIGHHMRDCEEVEKESDETIQFGPW
LKYDSPIETRGKDNQEIGKGTPRRGRGRGVNRGTFFNNGHGKHSGSFQLSEELGYH