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Spg014989 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014989
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold3:40448124..40451246
RNA-Seq ExpressionSpg014989
SyntenySpg014989
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066520.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0429.41Show/hide
Query:  AKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQ
        A+K  +ER+E T++ I  L+  +  + K +ER+     ++  ++  + S + +    FEI+ LT+ +K+  A++SF +D      V+S  P  +E+   +
Subjt:  AKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQ

Query:  AQLIEDRDIAIQLAIDTMG
        AQL+ D  IA++LA+   G
Subjt:  AQLIEDRDIAIQLAIDTMG

KAA0066613.1 reverse transcriptase [Cucumis melo var. makuwa]6.6e-0540.48Show/hide
Query:  EKSMERMTIMMADLMVSKRKTAS-TITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDI
        E S +R     A+++VS  K     + +  RYF+IH+LT+ EK+  + ISFD+  +DW  V   RP G  E+M  AQL+E+R+I
Subjt:  EKSMERMTIMMADLMVSKRKTAS-TITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDI

TYJ98820.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-0423.44Show/hide
Query:  CHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKG-----
        C C  ++ P   +  +    + +  + G+ TR         A++ +EER E T+K + GL+  +  ++KSM+R+T  M +    K++  S  + G     
Subjt:  CHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKG-----

Query:  -------------------------------------------LRYFEIHQLTKWEKITTAIISFDEDVVDWTG-VVSRRPIGQEEIMTQAQLIEDRDIA
                                                    ++FEI+ L   EK+  A++SF +D +     V+SR P   E+ M +AQL+ DR++A
Subjt:  -------------------------------------------LRYFEIHQLTKWEKITTAIISFDEDVVDWTG-VVSRRPIGQEEIMTQAQLIEDRDIA

Query:  IQLAIDTMG
        ++LA + +G
Subjt:  IQLAIDTMG

TrEMBL top hitse value%identityAlignment
A0A5A7VEZ7 Reverse transcriptase3.2e-0540.48Show/hide
Query:  EKSMERMTIMMADLMVSKRKTAS-TITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDI
        E S +R     A+++VS  K     + +  RYF+IH+LT+ EK+  + ISFD+  +DW  V   RP G  E+M  AQL+E+R+I
Subjt:  EKSMERMTIMMADLMVSKRKTAS-TITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDI

A0A5D3BGA5 Retrotransposon protein3.5e-0423.44Show/hide
Query:  CHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKG-----
        C C  ++ P   +  +    + +  + G+ TR         A++ +EER E T+K + GL+  +  ++KSM+R+T  M +    K++  S  + G     
Subjt:  CHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKG-----

Query:  -------------------------------------------LRYFEIHQLTKWEKITTAIISFDEDVVDWTG-VVSRRPIGQEEIMTQAQLIEDRDIA
                                                    ++FEI+ L   EK+  A++SF +D +     V+SR P   E+ M +AQL+ DR++A
Subjt:  -------------------------------------------LRYFEIHQLTKWEKITTAIISFDEDVVDWTG-VVSRRPIGQEEIMTQAQLIEDRDIA

Query:  IQLAIDTMG
        ++LA + +G
Subjt:  IQLAIDTMG

A0A5D3C4H6 Retrotransposon protein5.4e-0529.41Show/hide
Query:  AKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQ
        A+K  +ER+E T++ I  L+  +  + K +ER+     ++  ++  + S + +    FEI+ LT+ +K+  A++SF +D      V+S  P  +E+   +
Subjt:  AKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKGLRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQ

Query:  AQLIEDRDIAIQLAIDTMG
        AQL+ D  IA++LA+   G
Subjt:  AQLIEDRDIAIQLAIDTMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCATGGGACAATCTTGGGCTCGTTGAAATACGTCTTACCTGTCATTGTCAACAATTTGTGAGACCCCCAATAGTGAAGACTTACTCGAGGAAGGGCAAGAAGTG
GGATACCTACCAATTTGGCATTACAACACGTCATCCTAGGGAGAACACGCAAAATGGTGCAAAAAAAAAAATAGAAGAGAGAGTAGAGATTACGAAGAAAGCCATCAGTG
GACTGCAGCACTCGGTTCAACGAATAGAGAAAAGCATGGAAAGGATGACTATAATGATGGCCGATTTGATGGTGAGCAAAAGGAAGACCGCCTCCACCATTACCAAAGGC
TTAAGATACTTTGAGATACATCAACTCACAAAATGGGAGAAGATCACGACAGCGATTATCAGCTTTGACGAGGACGTTGTGGATTGGACAGGAGTGGTAAGCAGAAGACC
TATTGGGCAAGAAGAGATCATGACCCAAGCCCAACTAATTGAGGATAGAGATATAGCAATCCAGCTCGCAATTGATACCATGGGCCAAGGATCCATGCTAGGAACCGCGA
ACCCAGGAGATTTGTCCATTAACAAATCAGAGAAGTCGGAAAAGGAAACCAAGGAAGAACTTCCTCAGGCGGTCCAGGATCTGTTGAGGGGAGCCATGAATCACAGATCC
ACCTTTTCAACAGCTGTTTATTTGCATTCTCCA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCATGGGACAATCTTGGGCTCGTTGAAATACGTCTTACCTGTCATTGTCAACAATTTGTGAGACCCCCAATAGTGAAGACTTACTCGAGGAAGGGCAAGAAGTG
GGATACCTACCAATTTGGCATTACAACACGTCATCCTAGGGAGAACACGCAAAATGGTGCAAAAAAAAAAATAGAAGAGAGAGTAGAGATTACGAAGAAAGCCATCAGTG
GACTGCAGCACTCGGTTCAACGAATAGAGAAAAGCATGGAAAGGATGACTATAATGATGGCCGATTTGATGGTGAGCAAAAGGAAGACCGCCTCCACCATTACCAAAGGC
TTAAGATACTTTGAGATACATCAACTCACAAAATGGGAGAAGATCACGACAGCGATTATCAGCTTTGACGAGGACGTTGTGGATTGGACAGGAGTGGTAAGCAGAAGACC
TATTGGGCAAGAAGAGATCATGACCCAAGCCCAACTAATTGAGGATAGAGATATAGCAATCCAGCTCGCAATTGATACCATGGGCCAAGGATCCATGCTAGGAACCGCGA
ACCCAGGAGATTTGTCCATTAACAAATCAGAGAAGTCGGAAAAGGAAACCAAGGAAGAACTTCCTCAGGCGGTCCAGGATCTGTTGAGGGGAGCCATGAATCACAGATCC
ACCTTTTCAACAGCTGTTTATTTGCATTCTCCA
Protein sequenceShow/hide protein sequence
MPAWDNLGLVEIRLTCHCQQFVRPPIVKTYSRKGKKWDTYQFGITTRHPRENTQNGAKKKIEERVEITKKAISGLQHSVQRIEKSMERMTIMMADLMVSKRKTASTITKG
LRYFEIHQLTKWEKITTAIISFDEDVVDWTGVVSRRPIGQEEIMTQAQLIEDRDIAIQLAIDTMGQGSMLGTANPGDLSINKSEKSEKETKEELPQAVQDLLRGAMNHRS
TFSTAVYLHSP