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Spg014995 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014995
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold3:47546521..47546967
RNA-Seq ExpressionSpg014995
SyntenySpg014995
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021734036.1 uncharacterized protein LOC110700741 [Chenopodium quinoa]2.0e-1033.88Show/hide
Query:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY
        +G+  + RDS G+++G S+V +   + +   E KAI+ GLKLA  +G   + +ESDCL VI  + ++    +    V+E+I +  +SF+ +S+S+I R+ 
Subjt:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY

Query:  NVVANAIAKWARSEGKSDVWI
        N VA+ +A +   E    +WI
Subjt:  NVVANAIAKWARSEGKSDVWI

XP_021867343.1 uncharacterized protein LOC110806015 [Spinacia oleracea]7.9e-1233.87Show/hide
Query:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY
        +G+ V+ RDS G +KG + V     + +   E KA   GL++   LG +NI +ESDCL ++  + +    R+    V+++I D  TSF  +SFS++ R+ 
Subjt:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY

Query:  NVVANAIAKWARSEGKSDVWIHWF
        N VA+ +A     E     W+H F
Subjt:  NVVANAIAKWARSEGKSDVWIHWF

XP_030940021.1 uncharacterized protein LOC115964936 [Quercus lobata]4.6e-1238.33Show/hide
Query:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY
        + I V+ RD  GS   AS+  L   F+   TE  A+ EG+ LA  +G   +  E D L +I  ++ EG+V ++ G +++ IRD + SFS   F +++RN 
Subjt:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY

Query:  NVVANAIAKWARSEGKSDVW
        N VA+ +AK AR  G S VW
Subjt:  NVVANAIAKWARSEGKSDVW

XP_030958588.1 uncharacterized protein LOC115980487 [Quercus lobata]3.3e-1037.29Show/hide
Query:  IRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNV
        I V+ RD  GSL  AS+  L   F++  TE  A+ EG+  A  LG  ++ +ESD L VI  IS   D  ++ G +++ I+D ++SF+  SF ++ R+ N 
Subjt:  IRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNV

Query:  VANAIAKWARSEGKSDVW
         A+ +A+ A S G S +W
Subjt:  VANAIAKWARSEGKSDVW

XP_030967655.1 uncharacterized protein LOC115988151 [Quercus lobata]3.0e-1138.14Show/hide
Query:  IRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNV
        I V+ RD  GSL  AS+  L   F++  TE  A+ EG+ LA ++G  ++ +ESD L VI  IS   D  +E G +++ I+D ++SF+  SF ++ R+ N 
Subjt:  IRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNV

Query:  VANAIAKWARSEGKSDVW
         A+ +A+ A S G S +W
Subjt:  VANAIAKWARSEGKSDVW

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein8.9e-0930.16Show/hide
Query:  GIHHRTGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSY
        G + R G+ ++ RD  G +  A +  +  D+ + K E  A+    + A + G  N+ LESD   +IN I+     R ++  ++E++ +   SF  I FS+
Subjt:  GIHHRTGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSY

Query:  ISRNYNVVANAIAKWARSEGKSDVWI
          R  N +A+ +AKWA S    +VW+
Subjt:  ISRNYNVVANAIAKWARSEGKSDVWI

A0A7H4LE47 Genome assembly, chromosome: II1.5e-0833.87Show/hide
Query:  RTGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRN
        R G  V+ RD  G ++ A+  Y +        E  A+ + L LA++ G + I + SDCL +IN I   G  R+  G +V +IR  AT F   S  +++R+
Subjt:  RTGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRN

Query:  YNVVANAIAKWARSEGKSDVWIHW
         N  A+ +AK A    ++DVW  W
Subjt:  YNVVANAIAKWARSEGKSDVWIHW

A0A7J6GMW5 Uncharacterized protein6.8e-0932.77Show/hide
Query:  GIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYN
        G+ V+ RD  G++  A  +++    +    E  AI  GLKLAD      I + SDC  VI+ ++ +     + G VV++      +F+ +SF +  R +N
Subjt:  GIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYN

Query:  VVANAIAKWARSEGKSDVW
         VAN +A WAR    S VW
Subjt:  VVANAIAKWARSEGKSDVW

A0A7N2L6Z9 Reverse transcriptase domain-containing protein1.0e-0939.17Show/hide
Query:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY
        +G+ V+ RD  G +  A    L   F +  TEL AI +GL LA  +    I LESD L  I L     +   E G +VE I      FS  SFSY+ R+Y
Subjt:  TGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNY

Query:  NVVANAIAKWARSEGKSDVW
        N+VA+ +A++A+S   S VW
Subjt:  NVVANAIAKWARSEGKSDVW

A0A803Q8X4 Uncharacterized protein6.8e-0932.77Show/hide
Query:  GIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYN
        G+ V+ RD  G++  A  +++    +    E  AI  GLKLAD      I + SDC  VI+ ++ +     + G VV++      +F+ +SF +  R +N
Subjt:  GIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYN

Query:  VVANAIAKWARSEGKSDVW
         VAN +A WAR    S VW
Subjt:  VVANAIAKWARSEGKSDVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.3e-0628.3Show/hide
Query:  RVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNVV
        R + R+  G  +   ++ LD      + E KA+   L+     G   + +E DC  + NL+S      N +  ++++IR  A  FS + FS++ R  N V
Subjt:  RVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNVV

Query:  ANAIAK
        A+ +AK
Subjt:  ANAIAK

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.8e-0429.49Show/hide
Query:  ELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNVVANAIAK
        E  A++  L+ A S+G   +++ SD  ++I  I+ E     E   ++ +I + +  F+++SFS++ R+ N VA+ +AK
Subjt:  ELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRATSFSEISFSYISRNYNVVANAIAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATGCAGCGTGGATTTCTGGCCATCCTCGCACTGGTATCGGAGTTTTATGTAGGGATTCATCATCGCACTGGTATCAGAGTTTTATGTAGGGATTCATTTGGTTC
TCTGAAGGGAGCTTCTGCCGTTTATCTTGACATGGATTTCGCCTCCCCAAAGACTGAATTGAAAGCGATCTGGGAAGGCTTAAAGCTGGCCGATTCCCTAGGATGTAAGA
ATATAACGTTGGAATCCGATTGCCTCAAAGTGATCAATTTGATATCAAAGGAAGGGGATGTGAGAAATGAGATGGGAACTGTGGTGGAAGAAATTCGTGATCGAGCTACG
TCCTTCTCTGAAATTTCATTCTCATATATTTCTAGGAATTACAATGTTGTAGCAAACGCCATAGCCAAATGGGCTAGGAGTGAGGGGAAAAGTGATGTATGGATCCACTG
GTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGATGCAGCGTGGATTTCTGGCCATCCTCGCACTGGTATCGGAGTTTTATGTAGGGATTCATCATCGCACTGGTATCAGAGTTTTATGTAGGGATTCATTTGGTTC
TCTGAAGGGAGCTTCTGCCGTTTATCTTGACATGGATTTCGCCTCCCCAAAGACTGAATTGAAAGCGATCTGGGAAGGCTTAAAGCTGGCCGATTCCCTAGGATGTAAGA
ATATAACGTTGGAATCCGATTGCCTCAAAGTGATCAATTTGATATCAAAGGAAGGGGATGTGAGAAATGAGATGGGAACTGTGGTGGAAGAAATTCGTGATCGAGCTACG
TCCTTCTCTGAAATTTCATTCTCATATATTTCTAGGAATTACAATGTTGTAGCAAACGCCATAGCCAAATGGGCTAGGAGTGAGGGGAAAAGTGATGTATGGATCCACTG
GTTTTAG
Protein sequenceShow/hide protein sequence
MLMQRGFLAILALVSEFYVGIHHRTGIRVLCRDSFGSLKGASAVYLDMDFASPKTELKAIWEGLKLADSLGCKNITLESDCLKVINLISKEGDVRNEMGTVVEEIRDRAT
SFSEISFSYISRNYNVVANAIAKWARSEGKSDVWIHWF