CuGenDBv2

Gene ID	Spg015080
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Genome location	scaffold3:45522358..45525045
RNA-Seq Expression	Spg015080
Synteny	Spg015080
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0008380 - RNA splicing (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR005576 - RNA polymerase Rpb7-like , N-terminal IPR012340 - Nucleic acid-binding, OB-fold IPR013238 - RNA polymerase III, subunit Rpc25 IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-115

92.07

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDADVEAEAEVEEDS
        DGLGPVSWWDGSGDAD  AE E EEDS
Subjt:  DGLGPVSWWDGSGDADVEAEAEVEEDS

XP_022152296.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia]

2.8e-115

92.54

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+VGEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID
        LGFFEDIYVPIHLLP+PSEFKPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIH+IEYPAIPVEQPKESN KF  EE QPKEST NVKAFAPMIVT TID
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID

Query:  YDGLGPVSWWDGSGDADVEAEAEVEEDS
        YDGLGPVSWWDGSGD D EAE   EEDS
Subjt:  YDGLGPVSWWDGSGDADVEAEAEVEEDS

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]

1.0e-117

92.51

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDADVEAEAEVEEDS
        DGLGPVSWWDGSGDAD +AEAE EEDS
Subjt:  DGLGPVSWWDGSGDADVEAEAEVEEDS

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]

4.3e-116

91.7

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSI+YP IPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDAD--VEAEAEVEEDS
        DGLGPVSWWDGSGDAD   EAEAE EEDS
Subjt:  DGLGPVSWWDGSGDAD--VEAEAEVEEDS

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]

2.5e-116

92.51

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDADVEAEAEVEEDS
        DGLGPVSWWDGSGDAD  A+AE EEDS
Subjt:  DGLGPVSWWDGSGDADVEAEAEVEEDS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K846 Uncharacterized protein

1.7e-105

82.74

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRPF GE+IIGKV+ESN NGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD
        LGFFEDIYVP+ L+PS SEF PD  NGG+ RWVW Y+  P+DIYE+DEIKF++HSIEYPAI VEQPKESNSKFPMEE+PKES NVK FAPM++TA++D D
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD

Query:  GLGPVSWWDGSGDADVEAEAEVEEDS
        GLGPVSWWDGSG+A+ E E EVEEDS
Subjt:  GLGPVSWWDGSGDADVEAEAEVEEDS

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X1

1.7e-105

84.07

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRPF GE+IIGKV+ESN NGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD
        LGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW Y+  P+DIYE+DEIKF+IHSIEYPAI VEQPKESNSKFPMEE+PKES NVK FAPM++TA++D D
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD

Query:  GLGPVSWWDGSGDADVEAEAEVEEDS
        GLGPVSWWDGSG+A  EAE EVEEDS
Subjt:  GLGPVSWWDGSGDADVEAEAEVEEDS

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X2

1.4e-115

92.54

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+VGEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID
        LGFFEDIYVPIHLLP+PSEFKPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIH+IEYPAIPVEQPKESN KF  EE QPKEST NVKAFAPMIVT TID
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID

Query:  YDGLGPVSWWDGSGDADVEAEAEVEEDS
        YDGLGPVSWWDGSGD D EAE   EEDS
Subjt:  YDGLGPVSWWDGSGDADVEAEAEVEEDS

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC8

5.0e-118

92.51

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDADVEAEAEVEEDS
        DGLGPVSWWDGSGDAD +AEAE EEDS
Subjt:  DGLGPVSWWDGSGDADVEAEAEVEEDS

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC8

2.1e-116

91.7

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRS+DGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKES+ANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSI+YP IPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDAD--VEAEAEVEEDS
        DGLGPVSWWDGSGDAD   EAEAE EEDS
Subjt:  DGLGPVSWWDGSGDAD--VEAEAEVEEDS

SwissProt top hits

e value

%identity

Alignment

O94285 DNA-directed RNA polymerase III subunit rpc8

7.6e-31

34.72

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   I  G I   DG++   VVF LI+FRPF GE+++GK+K  +  G+R++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMI
        + FF+DI++P  +L  P  F+PD     +R WVW  +G+         +DI E  EI+F+I S ++  I  ++ K + +    E        +++ +P  
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMI

Query:  VTATIDYDGLGPVSWW
        + A+   DGLG  +WW
Subjt:  VTATIDYDGLGPVSWW

P35718 DNA-directed RNA polymerase III subunit RPC8

9.3e-29

31.34

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +++ G + P DG++   V F  +VF+PF+GEI+ G + +  A G+++S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  -LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRIHSIEY----PAIPVEQPKESNSKFPMEEQPKESTNVKAFAP--MI
         LG F+DI++P ++L     + P+     +  W+W  D +    ++ +E I+FRI    +    P  P E+  E  ++   E + K     +   P    
Subjt:  -LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRIHSIEY----PAIPVEQPKESNSKFPMEEQPKESTNVKAFAP--MI

Query:  VTATIDYDGLGPVSWWD
        +  +   DG+G VSWW+
Subjt:  VTATIDYDGLGPVSWWD

Q2T9X1 DNA-directed RNA polymerase III subunit RPC8

1.8e-32

34.88

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K  +  G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +E++FR+    +       P  + +    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWWDGS
        I   GLG +SWW  S
Subjt:  IDYDGLGPVSWWDGS

Q9D2C6 DNA-directed RNA polymerase III subunit RPC8

8.1e-33

35.85

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K  +  G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+    +       P  + +    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWW
        I   GLG +SWW
Subjt:  IDYDGLGPVSWW

Q9Y535 DNA-directed RNA polymerase III subunit RPC8

6.2e-33

35.85

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K  +  G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+    +       P  +++    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWW
        I   GLG +SWW
Subjt:  IDYDGLGPVSWW

Arabidopsis top hits

e value

%identity

Alignment

AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein

1.5e-66

54.09

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+S++GGF+ P DGAATYKV   ++VFRPFVGE+I  K KES+ANGLR++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATI
        LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P E+ +++                K FAPM+VT  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATI

Query:  DYDGLGPVSWWDGSGDADVE
        D DGLGPVSWWD     D E
Subjt:  DYDGLGPVSWWDGSGDADVE

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein

1.5e-58

53.27

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+S++GGF+ P DGAATYKV   ++VFRPFVGE+I  K KES+ANGLR++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P E+ +++                K FAPM+VT +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

AT5G59180.1 DNA-directed RNA polymerase II

3.0e-06

27.27

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Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS
        MF+   +E  +++ P      + + +  +L K          G  +++  I +I  G I    G  T+ V +  +VFRPF GEI+   V   N  G    
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFK
         G  + I+V  HL+P   EF+
Subjt:  LGFFEDIYVPIHLLPSPSEFK

Sequences

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CDS sequence

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ACCTCCAAGAATGTATTTTGGTTGGAATTAGACTCGAAGAATATCCAAATGTTCTACCTTAGCCGAATTGAGCACACCTTACGTGTGCCTCCGAGCATGCTTCACCTACC
TATCCTTGATGCTATTAAGGGCGAGCTAGAGAAACTATTCCTGGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCAATTGATGGGGGCT
TTATCTTTCCCAGCGATGGCGCTGCAACATACAAGGTTGTGTTCACATTGATTGTGTTTCGTCCGTTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAAATGCA
AATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTTATGTTCCCATCCATCTTTTGCCCTCTCCATCTGAATTCAAGCCCGATCCAAAAAATGGCGGAAAACGCAG
ATGGGTATGGGACTATGATGGTCAACCATACGACATATATGAAACTGATGAGATAAAATTTAGAATACACAGCATAGAGTACCCTGCAATCCCGGTGGAGCAGCCAAAAG
AGAGCAATTCAAAATTCCCAATGGAGGAGCAGCCCAAAGAGAGTACTAATGTAAAAGCATTTGCCCCCATGATTGTTACTGCAACAATTGATTATGATGGATTGGGCCCT
GTTTCGTGGTGGGATGGTTCGGGAGATGCCGATGTAGAGGCCGAGGCCGAGGTCGAAGAAGATTCCTAA

mRNA sequence

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Protein sequence

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TSKNVFWLELDSKNIQMFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSIDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESNA
NGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYDGLGP
VSWWDGSGDADVEAEAEVEEDS

Spg015080 (gene) of Sponge gourd (cylindrica) v1 genome