; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015176 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015176
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionAdenine DNA glycosylase
Genome locationscaffold3:41359808..41360503
RNA-Seq ExpressionSpg015176
SyntenySpg015176
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0000701 - purine-specific mismatch base pair DNA N-glycosylase activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR003265 - HhH-GPD domain
IPR011257 - DNA glycosylase
IPR044298 - Adenine/Thymine-DNA glycosylase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN46403.2 hypothetical protein Csa_005328 [Cucumis sativus]1.6e-6789.19Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNENDEY+K+ TDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

TYK24629.1 adenine DNA glycosylase isoform X1 [Cucumis melo var. makuwa]6.1e-6789.19Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNEN+E VK+KTDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

XP_004140565.2 adenine DNA glycosylase isoform X1 [Cucumis sativus]1.6e-6789.19Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNENDEY+K+ TDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

XP_031743606.1 adenine DNA glycosylase isoform X3 [Cucumis sativus]5.5e-6888.67Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNENDEY+K+ TDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLEVI
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E+I
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLEVI

XP_031743608.1 adenine DNA glycosylase isoform X5 [Cucumis sativus]1.6e-6789.19Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNENDEY+K+ TDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

TrEMBL top hitse value%identityAlignment
A0A0A0KC27 Adenine DNA glycosylase7.8e-6889.19Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNENDEY+K+ TDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

A0A1S3CBT2 Adenine DNA glycosylase4.3e-6687.84Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNEN+E VK+KTDFR++KKPT +RKR+ RSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

A0A5A7T8X3 Adenine DNA glycosylase2.9e-6789.19Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNEN+E VK+KTDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

A0A5D3DMU5 Adenine DNA glycosylase2.9e-6789.19Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNEN+E VK+KTDFR++KKPT ERKR+GRSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

E5GB45 Adenine DNA glycosylase4.3e-6687.84Show/hide
Query:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT
        MSDGEKNEN+E VK+KTDFR++KKPT +RKR+ RSPS+ EA VDIEDIMFSID V TIRASLLDWYDRSRRDLPWRSLDKG+PETRAYGVWVSE+MLQQT
Subjt:  MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREA-VDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQT

Query:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE
        RVQTVVQFYNRWM KWPTVQHLSRASLEEVNEMWAGLGYYRRARFL E
Subjt:  RVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLE

SwissProt top hitse value%identityAlignment
F4JRF4 Adenine DNA glycosylase1.1e-3146.75Show/hide
Query:  DGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSERE----AVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRS-LDKGQPETRAYGVWVSEVMLQ
        + E+ E  E  + + D  + ++ ++E + +    +E E      DIED +FS ++   IR  LLDWYD ++RDLPWR+   + + E RAY VWVSE+MLQ
Subjt:  DGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSERE----AVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRS-LDKGQPETRAYGVWVSEVMLQ

Query:  QTRVQTVVQFYNRWMHKWPTVQHLSRASLE-------------------EVNEMWAGLGYYRRARFLLE
        QTRVQTV+++Y RWM KWPT+  L +ASLE                   EVNEMWAGLGYYRRARFLLE
Subjt:  QTRVQTVVQFYNRWMHKWPTVQHLSRASLE-------------------EVNEMWAGLGYYRRARFLLE

P17802 Adenine DNA glycosylase1.6e-1751.14Show/hide
Query:  ASLLDWYDR-SRRDLPWRSLDKGQPETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFL
        A +LDWYD+  R+ LPW      Q +   Y VW+SEVMLQQT+V TV+ ++ R+M ++PTV  L+ A L+EV  +W GLGYY RAR L
Subjt:  ASLLDWYDR-SRRDLPWRSLDKGQPETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFL

Q8R5G2 Adenine DNA glycosylase2.6e-2852.1Show/hide
Query:  RQGRSPSEREAVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQP--ETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEE
        +Q R    +  V    +   I  V   R +LL WYD+ +RDLPWR   K +   + RAY VWVSEVMLQQT+V TV+ +Y RWM KWPT+Q L+ ASLEE
Subjt:  RQGRSPSEREAVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQP--ETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEE

Query:  VNEMWAGLGYYRRARFLLE
        VN++W+GLGYY R R L E
Subjt:  VNEMWAGLGYYRRARFLLE

Q99P21 Adenine DNA glycosylase8.9e-2950.42Show/hide
Query:  RQGRSPSEREAVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSL--DKGQPETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEE
        +Q R    + +V    +   +  V   R++LL WYD+ +RDLPWR+L  ++   + RAY VWVSEVMLQQT+V TV+ +Y RWM KWP +Q L+ ASLEE
Subjt:  RQGRSPSEREAVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSL--DKGQPETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEE

Query:  VNEMWAGLGYYRRARFLLE
        VN++W+GLGYY R R L E
Subjt:  VNEMWAGLGYYRRARFLLE

Q9UIF7 Adenine DNA glycosylase1.5e-2852.94Show/hide
Query:  RSPSE---REAVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPW--RSLDKGQPETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEE
        R P E   + +V    +   + +V   R SLL WYD+ +RDLPW  R+ D+   + RAY VWVSEVMLQQT+V TV+ +Y  WM KWPT+Q L+ ASLEE
Subjt:  RSPSE---REAVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPW--RSLDKGQPETRAYGVWVSEVMLQQTRVQTVVQFYNRWMHKWPTVQHLSRASLEE

Query:  VNEMWAGLGYYRRARFLLE
        VN++WAGLGYY R R L E
Subjt:  VNEMWAGLGYYRRARFLLE

Arabidopsis top hitse value%identityAlignment
AT4G12740.1 HhH-GPD base excision DNA repair family protein8.0e-3346.75Show/hide
Query:  DGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSERE----AVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRS-LDKGQPETRAYGVWVSEVMLQ
        + E+ E  E  + + D  + ++ ++E + +    +E E      DIED +FS ++   IR  LLDWYD ++RDLPWR+   + + E RAY VWVSE+MLQ
Subjt:  DGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSERE----AVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRS-LDKGQPETRAYGVWVSEVMLQ

Query:  QTRVQTVVQFYNRWMHKWPTVQHLSRASLE-------------------EVNEMWAGLGYYRRARFLLE
        QTRVQTV+++Y RWM KWPT+  L +ASLE                   EVNEMWAGLGYYRRARFLLE
Subjt:  QTRVQTVVQFYNRWMHKWPTVQHLSRASLE-------------------EVNEMWAGLGYYRRARFLLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGACGGAGAAAAGAACGAGAACGACGAGTATGTGAAGCAAAAGACTGATTTTCGTCAGAGAAAGAAACCCACGAAGGAACGAAAACGCCAGGGCCGAAGTCCGTC
TGAAAGGGAAGCAGTTGACATTGAAGATATCATGTTCAGCATAGACAAAGTTCCGACGATCAGAGCATCGCTATTGGATTGGTACGACCGTAGCCGTAGGGACCTTCCTT
GGAGGAGCTTGGACAAAGGACAGCCTGAAACACGGGCTTACGGCGTGTGGGTTTCAGAAGTAATGCTGCAGCAGACGAGAGTTCAGACCGTCGTTCAATTTTACAACCGT
TGGATGCATAAATGGCCCACTGTTCAACATCTCTCTCGTGCTTCTCTCGAGGAGGTGAATGAAATGTGGGCAGGCTTGGGGTACTATAGACGAGCTCGTTTTCTTTTGGA
GGTAATCTTTACTCGCTGCACTAAAGTTTCAATTCCATTTACATCTGCCACCATGATTGTTCTTCCTTCCAGTTTCGTTGGACATGATTTATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGACGGAGAAAAGAACGAGAACGACGAGTATGTGAAGCAAAAGACTGATTTTCGTCAGAGAAAGAAACCCACGAAGGAACGAAAACGCCAGGGCCGAAGTCCGTC
TGAAAGGGAAGCAGTTGACATTGAAGATATCATGTTCAGCATAGACAAAGTTCCGACGATCAGAGCATCGCTATTGGATTGGTACGACCGTAGCCGTAGGGACCTTCCTT
GGAGGAGCTTGGACAAAGGACAGCCTGAAACACGGGCTTACGGCGTGTGGGTTTCAGAAGTAATGCTGCAGCAGACGAGAGTTCAGACCGTCGTTCAATTTTACAACCGT
TGGATGCATAAATGGCCCACTGTTCAACATCTCTCTCGTGCTTCTCTCGAGGAGGTGAATGAAATGTGGGCAGGCTTGGGGTACTATAGACGAGCTCGTTTTCTTTTGGA
GGTAATCTTTACTCGCTGCACTAAAGTTTCAATTCCATTTACATCTGCCACCATGATTGTTCTTCCTTCCAGTTTCGTTGGACATGATTTATGTTGA
Protein sequenceShow/hide protein sequence
MSDGEKNENDEYVKQKTDFRQRKKPTKERKRQGRSPSEREAVDIEDIMFSIDKVPTIRASLLDWYDRSRRDLPWRSLDKGQPETRAYGVWVSEVMLQQTRVQTVVQFYNR
WMHKWPTVQHLSRASLEEVNEMWAGLGYYRRARFLLEVIFTRCTKVSIPFTSATMIVLPSSFVGHDLC