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Spg015204 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015204
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:29298437..29299674
RNA-Seq ExpressionSpg015204
SyntenySpg015204
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.1e-1261.84Show/hide
Query:  LLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQ
        LLT +VL DNDAIVEIELPV DTLP S ESS S S S         + EDDVCWLH +   K A   GGGVTTWYQ
Subjt:  LLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQ

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1256.1Show/hide
Query:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV
        PL T SVLRDNDA+VEIELPVPDTLPTS ESS+S SS+ ++   +            + EDDVCWLHA+   K A   GGGV
Subjt:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.6e-1263.16Show/hide
Query:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTW
        PL T SVLRDNDA+ EIELPVPDTL TS ESS S S S+ I +G       DDVCWLHAI   K+    GGGVTTW
Subjt:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTW

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.1e-1362.67Show/hide
Query:  TSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQS
        T SVL DNDA+VEIELPV DTLPTS ESS+S S S         +  DDVCWLH++   K AS  GGGVTTWYQS
Subjt:  TSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1256.1Show/hide
Query:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV
        PL T SVLRDNDA+VEIELPVPDTLPTS ESS+S SS+ ++   +            + EDDVCWLHA+   K A   GGGV
Subjt:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase1.7e-1256.1Show/hide
Query:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV
        PL T SVLRDNDA+VEIELPVPDTLPTS ESS+S SS+ ++   +            + EDDVCWLHA+   K A   GGGV
Subjt:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV

A0A5D3BNX1 Zf-CCHC domain-containing protein7.6e-1363.16Show/hide
Query:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTW
        PL T SVLRDNDA+ EIELPVPDTL TS ESS S S S+ I +G       DDVCWLHAI   K+    GGGVTTW
Subjt:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTW

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.0e-1261.84Show/hide
Query:  LLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQ
        LLT +VL DNDAIVEIELPV DTLP S ESS S S S         + EDDVCWLH +   K A   GGGVTTWYQ
Subjt:  LLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQ

A0A5D3CU23 Retrotrans_gag domain-containing protein5.3e-1462.67Show/hide
Query:  TSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQS
        T SVL DNDA+VEIELPV DTLPTS ESS+S S S         +  DDVCWLH++   K AS  GGGVTTWYQS
Subjt:  TSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQS

A0A5D3DX39 Reverse transcriptase1.7e-1256.1Show/hide
Query:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV
        PL T SVLRDNDA+VEIELPVPDTLPTS ESS+S SS+ ++   +            + EDDVCWLHA+   K A   GGGV
Subjt:  PLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLASSLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCCTCCACGTGTAAAACAGCTTCAGTTGCCATTCTGCCTCTACCAGCTCACGCTATAGCATTATCTGTGCAAATTGAAGCTCCAAGTTATATTCCGTTGTTGAC
GTCGAGTGTACTTCGTGACAACGATGCTATTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGCTCCAAGTCGACTTCCAGTTCAATGATTC
AGCAGGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCATGCCATCTCCCTGACTAAGCTAGCAAGTAGTTTGGGAGGGGGTGTGACAACTTGGTATCAG
AGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCCTCCACGTGTAAAACAGCTTCAGTTGCCATTCTGCCTCTACCAGCTCACGCTATAGCATTATCTGTGCAAATTGAAGCTCCAAGTTATATTCCGTTGTTGAC
GTCGAGTGTACTTCGTGACAACGATGCTATTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGCTCCAAGTCGACTTCCAGTTCAATGATTC
AGCAGGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCATGCCATCTCCCTGACTAAGCTAGCAAGTAGTTTGGGAGGGGGTGTGACAACTTGGTATCAG
AGCAGTTAG
Protein sequenceShow/hide protein sequence
MKSSTCKTASVAILPLPAHAIALSVQIEAPSYIPLLTSSVLRDNDAIVEIELPVPDTLPTSVESSKSTSSSMIQQGQQVSLEEDDVCWLHAISLTKLASSLGGGVTTWYQ
SS