CuGenDBv2

Gene ID	Spg015209
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	scaffold3:41369365..41377214
RNA-Seq Expression	Spg015209
Synteny	Spg015209
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

5.7e-129

82.55

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVE  SKPVEEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD TMSD GD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EE+VT       NDESTPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

XP_022148876.1 U2 small nuclear ribonucleoprotein A' [Momordica charantia]

2.2e-136

85.36

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVEN SKP EEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDG D
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        E+NV+KDVKEQ NDES PMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

1.3e-138

86.29

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEN SKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDGGD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EENV+KD KEQSNDESTPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

3.9e-138

85.98

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEN SKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD T+SDGGD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EENV+KD KEQSNDESTPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

3.3e-137

85.67

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FVPGEVEN SKPVEEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APT EQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNTVPNTTK+TDD TMSD GD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EENV+KDVKEQSNDE TPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

8.8e-128

81.93

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE  SKPVEEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT PN TKD DD T S  GD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EE+VT       NDESTPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

1.0e-136

85.36

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVEN SKP EEKQTSNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDG D
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        E+NV+KDVKEQ NDES PMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

6.5e-139

86.29

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEN SKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD TMSDGGD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EENV+KD KEQSNDESTPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

1.9e-138

85.98

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVEN SKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV NTTKDTDD T+SDGGD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EENV+KD KEQSNDESTPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

E5GB46 U2 small nuclear ribonucleoprotein a

8.8e-128

81.93

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE  SKPVEEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD
        APTPEQIIAIK                                    AAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT PN TKD DD T S  GD
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGD

Query:  EENVTKDVKEQSNDESTPMEQ
        EE+VT       NDESTPMEQ
Subjt:  EENVTKDVKEQSNDESTPMEQ

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

4.6e-49

45.99

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENTSKPVEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG       P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENTSKPVEEKQTSN

Query:  VSAPTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK+                                    AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'

1.2e-92

69.82

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +T  V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIK                                    AAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

3.9e-48

45.62

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENTSKPVEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG       P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENTSKPVEEKQTSN

Query:  VSAPTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLP
           P+   + AIK+                                    AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLP

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

4.6e-49

45.99

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENTSKPVEEKQTSN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG       P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENTSKPVEEKQTSN

Query:  VSAPTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK+                                    AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

1.2e-41

49.2

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LP L TL LTNN +
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVE
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  A+ +F  K  ++  +A ++SV T  P E+E
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVE

Arabidopsis top hits

e value

%identity

Alignment

AT1G09760.1 U2 small nuclear ribonucleoprotein A

8.3e-94

69.82

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +T  V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVS

Query:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIK                                    AAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKDRETCVFDLKCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGCGACTTACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAGCTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCT
AGGTGCTACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATA
ATAGAATCACTCGTATCAATCCAAACATTGGAGAGTTCTTGCCAAAATTACATACATTAGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCA
TCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAAGTCACTCAGGGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCAAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACGTTCGTTCCAGGTGAAG
TAGAGAATACATCCAAACCTGTGGAGGAGAAACAAACTTCTAATGTGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGATCGAGAGACTTGTGTCTTTGATCTC
AAGTGTTGGCTCTTTCTCGCTTGCTTCCTTCCCATTCTTGTTCTTACACTCCTTCGAGCCAAACTTTATATCTTGGAGGAGGCGGCCATTGTCAATTCCCAAACTCTTGA
AGAGGTTGCGAGATTAGAACAGGCGCTAAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGCCAAATACCACAAAAGATACAGATGATACGA
CAATGTCTGATGGTGGAGATGAAGAAAATGTTACTAAGGATGTAAAAGAACAATCGAATGATGAATCTACACCAATGGAGCAGGTACCACGACCTTTCTACTATTTGAGT
GATGCCTTTGTGCTTTTTTATTTTTTGGGAACAGTAGAATATTGTTGCTCTTACTACTTGGTGGCTCATCAATTAGCATTCAACGATGGTTATCCTGTCACAGCAATCAT
TCCACGAGAACAAGAGCAGCACTGTCGCAAAAGATTGGAGCATGCATCCTTGACGATCTATCAGATAATTGGCGCCAAATCCAGATCTCAAAAGGACATAACCCCTACA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLA
SLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENTSKPVEEKQTSNVSAPTPEQIIAIKDRETCVFDL
KCWLFLACFLPILVLTLLRAKLYILEEAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVPNTTKDTDDTTMSDGGDEENVTKDVKEQSNDESTPMEQVPRPFYYLS
DAFVLFYFLGTVEYCCSYYLVAHQLAFNDGYPVTAIIPREQEQHCRKRLEHASLTIYQIIGAKSRSQKDITPT

Spg015209 (gene) of Sponge gourd (cylindrica) v1 genome