; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015333 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015333
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationscaffold3:44383803..44387644
RNA-Seq ExpressionSpg015333
SyntenySpg015333
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR012337 - Ribonuclease H-like superfamily
IPR027113 - Transcription factor NFYB/HAP3
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575846.1 Nuclear transcription factor Y subunit B-5, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5991.11Show/hide
Query:  MDDNTGKQERLVEFKYDFST----GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDK
        MDDNT   ERLVEFKYDF+T    GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDK
Subjt:  MDDNTGKQERLVEFKYDFST----GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDK

Query:  CHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        CHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLI
Subjt:  CHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLI

XP_022953161.1 nuclear transcription factor Y subunit B-1-like [Cucurbita moschata]8.0e-6092.48Show/hide
Query:  MDDNTGKQERLVEFKYDFSTGGGR--VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
        MDDNT   ERLVEFKYDF+TGGG   VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
Subjt:  MDDNTGKQERLVEFKYDFSTGGGR--VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH

Query:  KEKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        KEKRKTVNGDDICCALATLGFDDYAEPLRRYLI
Subjt:  KEKRKTVNGDDICCALATLGFDDYAEPLRRYLI

XP_022991512.1 nuclear transcription factor Y subunit B-1 [Cucurbita maxima]8.0e-6093.18Show/hide
Query:  MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDDNT   ERLVEFKYDF+T GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI

XP_023549145.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]8.0e-6093.18Show/hide
Query:  MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDDNT   ERLVEFKYDF+T GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI

XP_038876756.1 nuclear transcription factor Y subunit B-1-like [Benincasa hispida]8.0e-6092.42Show/hide
Query:  MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NTG  ERLVEFKYDF+ GGG  VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        EKRKTVNGDDICCALATLGFDDYAEPLRRYL+
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI

TrEMBL top hitse value%identityAlignment
A0A0A0K954 CBFD_NFYB_HMF domain-containing protein1.2e-5890.15Show/hide
Query:  MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NTG  ER +EFKYDF+ GG   VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        EKRKTVNGDDICCALATLGFDDYAEPLRRYL+
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI

A0A1S3BT19 nuclear transcription factor Y subunit B-19.5e-5990.91Show/hide
Query:  MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NTG  ER VEFKYDF+ GG   VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        EKRKTVNGDDICCALATLGFDDYAEPLRRYL+
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI

A0A5A7VLD2 Nuclear transcription factor Y subunit B-11.3e-5592.74Show/hide
Query:  ERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNG
        ER VEFKYDF+ GG   VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNG
Subjt:  ERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNG

Query:  DDICCALATLGFDDYAEPLRRYLI
        DDICCALATLGFDDYAEPLRRYL+
Subjt:  DDICCALATLGFDDYAEPLRRYLI

A0A6J1GM85 nuclear transcription factor Y subunit B-1-like3.9e-6092.48Show/hide
Query:  MDDNTGKQERLVEFKYDFSTGGGR--VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
        MDDNT   ERLVEFKYDF+TGGG   VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
Subjt:  MDDNTGKQERLVEFKYDFSTGGGR--VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH

Query:  KEKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        KEKRKTVNGDDICCALATLGFDDYAEPLRRYLI
Subjt:  KEKRKTVNGDDICCALATLGFDDYAEPLRRYLI

A0A6J1JM11 nuclear transcription factor Y subunit B-13.9e-6093.18Show/hide
Query:  MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDDNT   ERLVEFKYDF+T GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
        EKRKTVNGDDICCALATLGFDDYAEPLRRYLI
Subjt:  EKRKTVNGDDICCALATLGFDDYAEPLRRYLI

SwissProt top hitse value%identityAlignment
O82248 Nuclear transcription factor Y subunit B-56.2e-3977.45Show/hide
Query:  VVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQKT
        ++VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL      + +K 
Subjt:  VVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQKT

Query:  LH
         H
Subjt:  LH

Q67XJ2 Nuclear transcription factor Y subunit B-108.7e-3365.45Show/hide
Query:  RVGGSTGGSSEEAG--SGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD
        + GG  GGS E  G  S   + V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+D
Subjt:  RVGGSTGGSSEEAG--SGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD

Query:  YAEPLRRYLI
        Y +PL+ YL+
Subjt:  YAEPLRRYLI

Q9FGJ3 Nuclear transcription factor Y subunit B-27.8e-3465.79Show/hide
Query:  DFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT
        D  +GGG+ G +  G S        +  +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ T
Subjt:  DFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT

Query:  LGFDDYAEPLRRYL
        LGF+DY EPL+ YL
Subjt:  LGFDDYAEPLRRYL

Q9SIT9 Nuclear transcription factor Y subunit B-73.9e-3370.83Show/hide
Query:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQK
        KEQDR LPIANVGRIMK++LP N KISK+AKET+QECVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +    + +K
Subjt:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQK

Q9SLG0 Nuclear transcription factor Y subunit B-11.1e-3266.67Show/hide
Query:  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
        GG +GGS           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EP
Subjt:  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP

Query:  LRRYL
        L+ YL
Subjt:  LRRYL

Arabidopsis top hitse value%identityAlignment
AT2G13570.1 nuclear factor Y, subunit B72.8e-3470.83Show/hide
Query:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQK
        KEQDR LPIANVGRIMK++LP N KISK+AKET+QECVSEFISFVTGEASDKC +EKRKT+NGDDI  A+ TLGF+DY  PL+ YL +    + +K
Subjt:  KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQK

AT2G38880.2 nuclear factor Y, subunit B18.0e-3466.67Show/hide
Query:  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
        GG +GGS           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EP
Subjt:  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP

Query:  LRRYL
        L+ YL
Subjt:  LRRYL

AT2G47810.1 nuclear factor Y, subunit B54.4e-4077.45Show/hide
Query:  VVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQKT
        ++VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL      + +K 
Subjt:  VVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIEKSFKDDQKT

Query:  LH
         H
Subjt:  LH

AT3G53340.1 nuclear factor Y, subunit B106.1e-3465.45Show/hide
Query:  RVGGSTGGSSEEAG--SGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD
        + GG  GGS E  G  S   + V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETMQECVSEFISFVT EASDKC +EKRKT+NGDD+  A+ATLGF+D
Subjt:  RVGGSTGGSSEEAG--SGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDD

Query:  YAEPLRRYLI
        Y +PL+ YL+
Subjt:  YAEPLRRYLI

AT5G47640.1 nuclear factor Y, subunit B25.6e-3565.79Show/hide
Query:  DFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT
        D  +GGG+ G +  G S        +  +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEFISFVTGEASDKC KEKRKT+NGDD+  A+ T
Subjt:  DFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT

Query:  LGFDDYAEPLRRYL
        LGF+DY EPL+ YL
Subjt:  LGFDDYAEPLRRYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCCGCGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGG
TAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCGATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAG
CGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTGACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATT
TGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATCGAGAAGAGTTTTAAAGATGATCAGAAAACCCTACATATATTAGACAG
GGGATTGCATAGTATGGCAATTCGGGTTGGATTGCTGGCTGTTGGCGAGATGGGGCCTCCTCGATTGTTGGTGGAGTCAGATTGTTTGACAGTTGTAAATCTCTTAAATG
GGGTGGATGAGAACTTCACCTTAGTTCGTTCTGTGGCTATGGAGGTGCATAAGCTTTCTTCTTGTTTGGTGGAAGTACAGTTTAAACATATTCGACAAGGGCAAAATTTG
GTGGCTGATATGTTGGCGCGACGAGCAATGAGTAATGGGAATTATGGCACCTGGTTTTCGGGGTTTCCATGTTGGCTTCTTGAAGCATTAGAGGGTGACAAGCGAAAGTT
GGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCCGCGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGG
TAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCGATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAG
CGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTGACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATT
TGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATCGAGAAGAGTTTTAAAGATGATCAGAAAACCCTACATATATTAGACAG
GGGATTGCATAGTATGGCAATTCGGGTTGGATTGCTGGCTGTTGGCGAGATGGGGCCTCCTCGATTGTTGGTGGAGTCAGATTGTTTGACAGTTGTAAATCTCTTAAATG
GGGTGGATGAGAACTTCACCTTAGTTCGTTCTGTGGCTATGGAGGTGCATAAGCTTTCTTCTTGTTTGGTGGAAGTACAGTTTAAACATATTCGACAAGGGCAAAATTTG
GTGGCTGATATGTTGGCGCGACGAGCAATGAGTAATGGGAATTATGGCACCTGGTTTTCGGGGTTTCCATGTTGGCTTCTTGAAGCATTAGAGGGTGACAAGCGAAAGTT
GGTGTAA
Protein sequenceShow/hide protein sequence
MDDNTGKQERLVEFKYDFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI
CCALATLGFDDYAEPLRRYLIEKSFKDDQKTLHILDRGLHSMAIRVGLLAVGEMGPPRLLVESDCLTVVNLLNGVDENFTLVRSVAMEVHKLSSCLVEVQFKHIRQGQNL
VADMLARRAMSNGNYGTWFSGFPCWLLEALEGDKRKLV