; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015334 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015334
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSOSS complex subunit B homolog
Genome locationscaffold3:43890084..43890533
RNA-Seq ExpressionSpg015334
SyntenySpg015334
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150258.1 SOSS complex subunit B homolog [Momordica charantia]1.8e-6795.59Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        MISLKDLVPAAQNNVNAQFIVLDKGKTT +GQNKACLSLVADETAAVHFQLWGDECD VEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPPN
        ETPNMSEI WVP+T DSKKYVKESVLSPYSRIFPPN
Subjt:  ETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPPN

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]2.6e-6390.44Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVL+KG TT++GQNK C SLVADETAAVHFQLWG+ECD+VEPSDI+RLTNGIFSYSRN NLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+TT+SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

XP_022968811.1 SOSS complex subunit B homolog [Cucurbita maxima]2.9e-6288.97Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVL+KG TT+DGQNK C SLVADETAAVHFQLWG+ECD+VEPSDI+RL NGIFSYSR NNLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+T++SKKYVKESV+SPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]6.9e-6490.44Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVLDKG TT++GQNK C SLVADETAAVHFQLWG+ECD+VEPSDI+RLTNGIFSYSR NNLVLRAGKRGK+EKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+TT+SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]3.8e-6289.71Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI+LKDLVPAAQNNVN QFIVL+KG T ++GQNKAC SLVADETAAVHFQLWGDECD+VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+TT+S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

TrEMBL top hitse value%identityAlignment
A0A1S3BPN4 SOSS complex subunit B homolog4.5e-6188.24Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI LKDLVPAAQN VN QFIVL+KG TT++GQNK C SLVADETAAVHFQLWGDECD+VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+T +S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

A0A5D3CIR3 SOSS complex subunit B-like protein4.5e-6188.24Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI LKDLVPAAQN VN QFIVL+KG TT++GQNK C SLVADETAAVHFQLWGDECD+VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+T +S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

A0A6J1D803 SOSS complex subunit B homolog8.5e-6895.59Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        MISLKDLVPAAQNNVNAQFIVLDKGKTT +GQNKACLSLVADETAAVHFQLWGDECD VEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPPN
        ETPNMSEI WVP+T DSKKYVKESVLSPYSRIFPPN
Subjt:  ETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPPN

A0A6J1HAL0 SOSS complex subunit B homolog1.3e-6390.44Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVL+KG TT++GQNK C SLVADETAAVHFQLWG+ECD+VEPSDI+RLTNGIFSYSRN NLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+TT+SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

A0A6J1HZ66 SOSS complex subunit B homolog1.4e-6288.97Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVL+KG TT+DGQNK C SLVADETAAVHFQLWG+ECD+VEPSDI+RL NGIFSYSR NNLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        VETPNMSEIHWVP+T++SKKYVKESV+SPYSRIFPP
Subjt:  VETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP

SwissProt top hitse value%identityAlignment
A6QLK2 SOSS complex subunit B13.0e-1441.12Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        +KD+ P  + N+N  FIVL+ G+   T DG   + C   VAD+T +++  +W D  ++++P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ 
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSE
        E PN SE
Subjt:  ETPNMSE

Q3SWT1 SOSS complex subunit B18.0e-1538.41Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        +KD+ P  + N+N  FIVL+ G+   T DG   + C   VAD+T +++  +W D  ++++P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ 
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIHWVPNTTD-SKKYVK--ESVLSPYSRIFPP
        E PN SE +   NT   S K V+   S  +P +   PP
Subjt:  ETPNMSEIHWVPNTTD-SKKYVK--ESVLSPYSRIFPP

Q54X41 SOSS complex subunit B homolog6.1e-1536.72Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        +I + ++ P ++ N+N  FIVLDKG  T   +      LVAD TA+++  +W    + ++P DI+RL  G  +     L L  GK G IEK+GEF   FV
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIHWVPNTTDSKKYVKESVLSP
        E PN+S   W  N        K  V +P
Subjt:  ETPNMSEIHWVPNTTDSKKYVKESVLSP

Q8R2Y9 SOSS complex subunit B11.4e-1438.76Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        +KD+ P  + N+N  FIVL+ G+   T DG   + C   VAD+T +++  +W D  ++++P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ 
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKT--TVDGQN-KACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIHWVPNTTDS-KKYVKESVLSP
        E PN SE +   NT  +  K V+ +  SP
Subjt:  ETPNMSEIHWVPNTTDS-KKYVKESVLSP

Q9VM17 SOSS complex subunit B homolog2.8e-1540.37Show/hide
Query:  QMISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSL-VADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMV
        + I +KD+ P  + N+N  FIVL+ G  TV  +N+   +  V D TA ++  +W +   ++ P DI+RLT G  S  R+ L L +GK G++ K+GE+ MV
Subjt:  QMISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSL-VADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSE
        F E+ NMSE
Subjt:  FVETPNMSE

Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein8.1e-4762.41Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNN-LVLRAGKRGKIEKVGEFNMVFVET
        LKD+VPAAQNN++ +FI+LDK K++       C++L ADETAAVH QLWGDECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVET
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNN-LVLRAGKRGKIEKVGEFNMVFVET

Query:  PNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP
        PN+SEI W+P+  + K+Y++  V+S YSRIFPP
Subjt:  PNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGTTTGTTAGAGGCAGTAAAGAAGAAGCAAATGATATCTCTCAAGGACTTGGTGCCAGCAGCACAGAACAATGTGAATGCACAGTTCATAGTTTTGGACAAAGG
GAAGACAACAGTTGATGGACAAAACAAGGCATGTCTATCGTTGGTGGCCGACGAAACAGCTGCAGTTCACTTCCAGCTATGGGGAGATGAGTGTGATATGGTCGAGCCAA
GCGACATTATCCGGTTGACGAATGGGATATTCTCCTACAGTCGAAACAACCTAGTCCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGGGAGTTCAACATGGTG
TTTGTAGAGACGCCAAATATGAGCGAGATCCATTGGGTTCCCAACACGACTGACTCGAAGAAGTATGTGAAGGAATCTGTTCTATCTCCCTATTCTCGTATCTTTCCACC
GAACCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGTTTGTTAGAGGCAGTAAAGAAGAAGCAAATGATATCTCTCAAGGACTTGGTGCCAGCAGCACAGAACAATGTGAATGCACAGTTCATAGTTTTGGACAAAGG
GAAGACAACAGTTGATGGACAAAACAAGGCATGTCTATCGTTGGTGGCCGACGAAACAGCTGCAGTTCACTTCCAGCTATGGGGAGATGAGTGTGATATGGTCGAGCCAA
GCGACATTATCCGGTTGACGAATGGGATATTCTCCTACAGTCGAAACAACCTAGTCCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGGGAGTTCAACATGGTG
TTTGTAGAGACGCCAAATATGAGCGAGATCCATTGGGTTCCCAACACGACTGACTCGAAGAAGTATGTGAAGGAATCTGTTCTATCTCCCTATTCTCGTATCTTTCCACC
GAACCTTTGA
Protein sequenceShow/hide protein sequence
MACLLEAVKKKQMISLKDLVPAAQNNVNAQFIVLDKGKTTVDGQNKACLSLVADETAAVHFQLWGDECDMVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMV
FVETPNMSEIHWVPNTTDSKKYVKESVLSPYSRIFPPNL