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Spg015366 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015366
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase core domain containing protein
Genome locationscaffold10:11703992..11707452
RNA-Seq ExpressionSpg015366
SyntenySpg015366
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]2.1e-5161.11Show/hide
Query:  NPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNL
        N  + QT + A    +  +EAA       +NPLYESW+  DQLLL WLYNSMTP+VATQVMG+E+  DLW AIQELFGVQS+AEEDYL QVFQQ+RKG+L
Subjt:  NPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNL

Query:  KMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLE-NGGNVGIYPEMRPHF
        KM+D+ R+MKSHA+NL QA SP+ TR LISQ+LLGLD+EYNP+VA IQG+ GI+W +MQAE    +GGN       +P F
Subjt:  KMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLE-NGGNVGIYPEMRPHF

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]5.3e-4257.32Show/hide
Query:  TGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYF
        T    +I G+ +S+++ T     +NP YE+WIVVD+LLL WLYNSM   VA QVMGF + ++LW A+QELFGVQSRAE DYL QVFQQ+ KG+L+M +Y 
Subjt:  TGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYF

Query:  RIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL
        ++MKSHA+NL  A S ++ R L+SQ+L GLD+EYNPIV  +QG+V ++WS+M AELL
Subjt:  RIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL

XP_038904321.1 uncharacterized protein LOC120090675 [Benincasa hispida]5.1e-4559.39Show/hide
Query:  MNPNSLQTGVR-ASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKG
        M+  S   GV   S  G++ S A+ +  T EVNP Y +W+ VDQLLL WLYNSMTPK+A QVMGFE  +DLW+ IQ+LFG+QSRAEEDYL  VFQ +RKG
Subjt:  MNPNSLQTGVR-ASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKG

Query:  NLKMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL
        NLKM DY R MK + +NL QA SP+  R L+ Q+LLGLD+EYN IVA IQGR  ++W  MQ++LL
Subjt:  NLKMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL

XP_038905161.1 uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]5.1e-4563.16Show/hide
Query:  SIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKS
        SI G++ S A+ ++   EVNP YESW+ VDQLLL WLYNSMTP+VA QVMG E  +DLW +I +LFGVQSR EEDYL  VFQ +RKGNLKM +Y + MK 
Subjt:  SIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKS

Query:  HANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL
        + +NL QA SP+  R L+SQ+LLGLD+EYN IVAMIQGRV ++W  MQ+ELL
Subjt:  HANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]5.1e-4563.16Show/hide
Query:  SIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKS
        SI G++ S A+ ++   EVNP YESW+ VDQLLL WLYNSMTP+VA QVMG E  +DLW +I +LFGVQSR EEDYL  VFQ +RKGNLKM +Y + MK 
Subjt:  SIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKS

Query:  HANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL
        + +NL QA SP+  R L+SQ+LLGLD+EYN IVAMIQGRV ++W  MQ+ELL
Subjt:  HANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL

TrEMBL top hitse value%identityAlignment
A0A5A7SIT7 Uncharacterized protein4.2e-3754.42Show/hide
Query:  ATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNL
        AT  A+ ++    VN L+E W+  D LLL WLYNSMTP VA Q+MGF +V+DLW A Q+ FGVQSRAEED+L Q+ Q +RKGN KM +Y  +MK++ +NL
Subjt:  ATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNL

Query:  VQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL
         Q  SP+  R LISQ+LLGLD+ YN ++ +IQG+  I+W  MQ++LL
Subjt:  VQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL

A0A5A7UY76 Integrase, catalytic core4.5e-3153.57Show/hide
Query:  NSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKM
        N +       I  A    ++ +  T  VNP ++ W+  D LLL W+YNSMT +VA Q+MGF + +DL  AIQ+LFGVQSR EED+L   FQ +RKGN KM
Subjt:  NSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKM

Query:  SDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNP
         DY RIMK++A NL QA SPI  R LISQ+LLGLD+ YNP
Subjt:  SDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNP

A0A5D3E3L7 Uncharacterized protein9.4e-3753.16Show/hide
Query:  GVRAS--IYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDY
        GV AS  +     + ++ ++ +  VNP YE W+  D LLL  +YNSM P VA Q+MGF + +DLW AIQ LFG++SRAEE +L   FQ +R+GN KM DY
Subjt:  GVRAS--IYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDY

Query:  FRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL
         RIMK +A+NL QA SP+  R LISQ+LLGLD+ YNP+ A+IQG+  I+W  MQ+ELL
Subjt:  FRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL

A0A6J1D5J0 uncharacterized protein LOC1110175011.0e-5161.11Show/hide
Query:  NPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNL
        N  + QT + A    +  +EAA       +NPLYESW+  DQLLL WLYNSMTP+VATQVMG+E+  DLW AIQELFGVQS+AEEDYL QVFQQ+RKG+L
Subjt:  NPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNL

Query:  KMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLE-NGGNVGIYPEMRPHF
        KM+D+ R+MKSHA+NL QA SP+ TR LISQ+LLGLD+EYNP+VA IQG+ GI+W +MQAE    +GGN       +P F
Subjt:  KMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLE-NGGNVGIYPEMRPHF

A0A6J1DCW4 uncharacterized protein LOC1110195982.5e-4257.32Show/hide
Query:  TGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYF
        T    +I G+ +S+++ T     +NP YE+WIVVD+LLL WLYNSM   VA QVMGF + ++LW A+QELFGVQSRAE DYL QVFQQ+ KG+L+M +Y 
Subjt:  TGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYF

Query:  RIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL
        ++MKSHA+NL  A S ++ R L+SQ+L GLD+EYNPIV  +QG+V ++WS+M AELL
Subjt:  RIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)5.0e-0626.72Show/hide
Query:  SWIVVDQLLLEWLYNSMTPK-VATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTRLLISQILL
        +W   D ++   LY ++TPK      +   + +D+WL I+  F     A    L    +    G+++++DY+R MK  A++L   + P+  R L+  +L 
Subjt:  SWIVVDQLLLEWLYNSMTPK-VATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTRLLISQILL

Query:  GLDKEYNPIVAMIQGR
        GL+ +++ I+ +I+ R
Subjt:  GLDKEYNPIVAMIQGR

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)1.7e-0626.21Show/hide
Query:  LQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFE-SVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMS
        L  GV   I G++T       P TE     + W   D L+  W+Y ++T  +   ++    + +DLWL+++ LF     A         + +   +L + 
Subjt:  LQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFE-SVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMS

Query:  DYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQ
        +Y + +KS ++ L   +SPI+ R+L+  +L GL ++Y+ I+ +I+
Subjt:  DYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCCAATTCATTGCAAACAGGGGTAAGAGCATCCATCTATGGAGCAGCTACAAGTGAAGCAGCAGAGACAGTCCCAACGACAGAAGTGAATCCACTATATGAATC
GTGGATTGTAGTTGATCAACTGCTATTAGAGTGGTTGTATAACTCAATGACGCCTAAAGTAGCCACTCAAGTTATGGGGTTTGAAAGTGTTCAAGATCTATGGTTAGCGA
TCCAAGAATTGTTCGGTGTGCAATCCCGTGCTGAGGAAGATTACCTCTGCCAGGTATTTCAACAATCTAGAAAAGGGAACTTGAAAATGTCTGATTATTTCCGAATTATG
AAGAGTCATGCAAACAACTTAGTGCAAGCAAACAGTCCAATCAACACTCGTTTGTTGATTTCACAAATTCTTTTGGGCCTTGACAAAGAGTACAACCCAATTGTTGCCAT
GATCCAAGGAAGAGTAGGAATAACCTGGTCTAAGATGCAAGCTGAATTGCTGGAAAACGGAGGAAATGTTGGAATTTACCCAGAAATGCGACCACATTTCTGGGAAGGCA
AAATGAAATACGACCGAATTTCTGGAAAAACTAAGGCAGTTCCGGATCGTCCGCGGGTCGTTTTGAACGAGACTTCTTCGCACCTAATCGGCTGTTTTAACCTCGAAACC
GACTGGGCTACCTACCAGCACCTATTTCGCAGCTCCTCAACCATTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCCAATTCATTGCAAACAGGGGTAAGAGCATCCATCTATGGAGCAGCTACAAGTGAAGCAGCAGAGACAGTCCCAACGACAGAAGTGAATCCACTATATGAATC
GTGGATTGTAGTTGATCAACTGCTATTAGAGTGGTTGTATAACTCAATGACGCCTAAAGTAGCCACTCAAGTTATGGGGTTTGAAAGTGTTCAAGATCTATGGTTAGCGA
TCCAAGAATTGTTCGGTGTGCAATCCCGTGCTGAGGAAGATTACCTCTGCCAGGTATTTCAACAATCTAGAAAAGGGAACTTGAAAATGTCTGATTATTTCCGAATTATG
AAGAGTCATGCAAACAACTTAGTGCAAGCAAACAGTCCAATCAACACTCGTTTGTTGATTTCACAAATTCTTTTGGGCCTTGACAAAGAGTACAACCCAATTGTTGCCAT
GATCCAAGGAAGAGTAGGAATAACCTGGTCTAAGATGCAAGCTGAATTGCTGGAAAACGGAGGAAATGTTGGAATTTACCCAGAAATGCGACCACATTTCTGGGAAGGCA
AAATGAAATACGACCGAATTTCTGGAAAAACTAAGGCAGTTCCGGATCGTCCGCGGGTCGTTTTGAACGAGACTTCTTCGCACCTAATCGGCTGTTTTAACCTCGAAACC
GACTGGGCTACCTACCAGCACCTATTTCGCAGCTCCTCAACCATTTCCTAA
Protein sequenceShow/hide protein sequence
MNPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIM
KSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLENGGNVGIYPEMRPHFWEGKMKYDRISGKTKAVPDRPRVVLNETSSHLIGCFNLET
DWATYQHLFRSSSTIS