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Spg015393 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015393
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold10:12615402..12617212
RNA-Seq ExpressionSpg015393
SyntenySpg015393
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.9e-1138.46Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKK
        +SPN C +C  + E ++HLFIHC  +QQLWS     LN +   P+ V SL +    +  ++Q+G +  N    I+W +W+ERN+RIF+ ++
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKK

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-1138.71Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD
        +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K+Q+G +  N    ++W +W+ERN+RIF+ +K +
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-1138.71Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD
        +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K+Q+G +  N    ++W +W+ERN+RIF+ +K +
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD

RVW56424.1 putative ribonuclease H protein [Vitis vinifera]2.0e-1037.72Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGF-LHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYG
        +SP+IC +C  + E +DHLF+HC +   LW  L Q   +    P S+  +    F     S+RG  L  N  +A++W +W ERN RI R K+  L IF G
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGF-LHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYG

Query:  RIFCLWLLYGLQLL
         +F    L+GL +L
Subjt:  RIFCLWLLYGLQLL

XP_030479135.1 uncharacterized protein LOC115696374 [Cannabis sativa]6.9e-1134.95Show/hide
Query:  MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFY
        ++ISP  CV C  N E ++HLF+HC+ + +LWS+L +   L   LP SV  +      +K   ++  L     +A IW++W+ERN RIF D +    + +
Subjt:  MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFY

Query:  GRI
         +I
Subjt:  GRI

TrEMBL top hitse value%identityAlignment
A0A438F923 Putative ribonuclease H protein9.7e-1137.72Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGF-LHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYG
        +SP+IC +C  + E +DHLF+HC +   LW  L Q   +    P S+  +    F     S+RG  L  N  +A++W +W ERN RI R K+  L IF G
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGF-LHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYG

Query:  RIFCLWLLYGLQLL
         +F    L+GL +L
Subjt:  RIFCLWLLYGLQLL

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.3e-1138.46Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKK
        +SPN C +C  + E ++HLFIHC  +QQLWS     LN +   P+ V SL +    +  ++Q+G +  N    I+W +W+ERN+RIF+ ++
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKK

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein6.7e-1238.71Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD
        +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K+Q+G +  N    ++W +W+ERN+RIF+ +K +
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein6.7e-1238.71Show/hide
Query:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD
        +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K+Q+G +  N    ++W +W+ERN+RIF+ +K +
Subjt:  ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD

A0A803QGT5 Uncharacterized protein3.3e-1134.95Show/hide
Query:  MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFY
        ++ISP  CV C  N E ++HLF+HC+ + +LWS+L +   L   LP SV  +      +K   ++  L     +A IW++W+ERN RIF D +    + +
Subjt:  MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFY

Query:  GRI
         +I
Subjt:  GRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTAGCCCCAACATTTGTGTCGTTTGTGGTTTGAATTCTGAAGCTTTGGACCACTTATTCATTCACTGCCAGATGGCTCAACAATTGTGGTCCCTTCTTCATCA
AGGATTAAACCTCAGCCTCCCTCTACCGTCCTCGGTGGTCTCTCTCCGTGAAGAGACTTTTGTTGTTAAAAGTAAATCTCAAAGGGGTTTTTTACATGTCAATCTCTTTG
TCGCCATCATATGGAGCCTCTGGATTGAAAGAAATGATCGCATCTTTCGGGATAAAAAGCCCGACCTATCTATATTCTATGGGAGGATATTTTGTCTTTGGTTGCTTTAT
GGTCTTCAACTTCTAGGGTCTTCTCTAACTATAGGCTTCGCCGGCGGAGTCGGAGCTGGGGAAGAAGAGCTATTCGACGAGGTTCTCGAAGCTGCTGAGGTTCGGGGAGA
AGATTCGGCGGAGCAGCAGCGCGATGGGAAGGAGGCTTTGGTGTTTCTGAGAAGTGCTTCGTCGGGAAGCGGCGGAGAGAAGGCGAAAGGGAAGGCGAAAGGGAAGGGAG
AGAAGCGGACGAAAGGGGAAACGACGTCGGATTGTCATGAGCGGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATTAGCCCCAACATTTGTGTCGTTTGTGGTTTGAATTCTGAAGCTTTGGACCACTTATTCATTCACTGCCAGATGGCTCAACAATTGTGGTCCCTTCTTCATCA
AGGATTAAACCTCAGCCTCCCTCTACCGTCCTCGGTGGTCTCTCTCCGTGAAGAGACTTTTGTTGTTAAAAGTAAATCTCAAAGGGGTTTTTTACATGTCAATCTCTTTG
TCGCCATCATATGGAGCCTCTGGATTGAAAGAAATGATCGCATCTTTCGGGATAAAAAGCCCGACCTATCTATATTCTATGGGAGGATATTTTGTCTTTGGTTGCTTTAT
GGTCTTCAACTTCTAGGGTCTTCTCTAACTATAGGCTTCGCCGGCGGAGTCGGAGCTGGGGAAGAAGAGCTATTCGACGAGGTTCTCGAAGCTGCTGAGGTTCGGGGAGA
AGATTCGGCGGAGCAGCAGCGCGATGGGAAGGAGGCTTTGGTGTTTCTGAGAAGTGCTTCGTCGGGAAGCGGCGGAGAGAAGGCGAAAGGGAAGGCGAAAGGGAAGGGAG
AGAAGCGGACGAAAGGGGAAACGACGTCGGATTGTCATGAGCGGCTTTAG
Protein sequenceShow/hide protein sequence
MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYGRIFCLWLLY
GLQLLGSSLTIGFAGGVGAGEEELFDEVLEAAEVRGEDSAEQQRDGKEALVFLRSASSGSGGEKAKGKAKGKGEKRTKGETTSDCHERL