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Spg015396 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015396
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold10:12584655..12590781
RNA-Seq ExpressionSpg015396
SyntenySpg015396
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]9.4e-1075Show/hide
Query:  PITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        P+  S  RVA  PTQY YHFGD TEWGAGN ITQDGIHSFP LG
Subjt:  PITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]2.3e-0875.61Show/hide
Query:  RSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        R + RVA  PTQY YHFGD T+WGAGNIITQD IHSF TLG
Subjt:  RSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-0883.78Show/hide
Query:  RVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        RVA  PTQY YHF D TEWGAGNIITQDGIHSFP LG
Subjt:  RVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.2e-1076.74Show/hide
Query:  ITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        I + + RVA  PTQY YHFGD TEWGAGNIITQDGIHSFP LG
Subjt:  ITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-0876.32Show/hide
Query:  RARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTL
        + RVA  PT+Y YHFGD TEWG GNIITQDGIHSFP L
Subjt:  RARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTL
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class4.6e-1075Show/hide
Query:  PITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        P+  S  RVA  PTQY YHFGD TEWGAGN ITQDGIHSFP LG
Subjt:  PITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
A0A5A7THR9 Uncharacterized protein1.1e-0875.61Show/hide
Query:  RSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        R + RVA  PTQY YHFGD T+WGAGNIITQD IHSF TLG
Subjt:  RSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
A0A5A7TKJ4 Gag/pol protein8.6e-0983.78Show/hide
Query:  RVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        RVA  PTQY YHF D TEWGAGNIITQDGIHSFP LG
Subjt:  RVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
A0A5A7VFG5 Ty1-copia retrotransposon protein2.0e-1076.74Show/hide
Query:  ITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
        I + + RVA  PTQY YHFGD TEWGAGNIITQDGIHSFP LG
Subjt:  ITRSRARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTLG
A0A5A7VKV9 Gag/pol protein1.9e-0876.32Show/hide
Query:  RARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTL
        + RVA  PT+Y YHFGD TEWG GNIITQDGIHSFP L
Subjt:  RARVAYTPTQYTYHFGDNTEWGAGNIITQDGIHSFPTL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAACTTCATCACCGAACCACTGCTCTGATACCACTTGTGATGAAACTGAAGCAAAAAACCAAAACTAAATCAGAGAGAAAGGATAAGAAATACACAATT
GTTTATAGTGGTTCAACCATCAGTGTGATGGCAAAAGCTTCATCTTCAAAGGGCAAAAGCCCATCTTCATCCTCAGCACCTTCGCAAATAAGTGCTGATCAATAC
GTTATGGATCTAGGGTTTACTCCGATAACCCGTTCTAGAGCAAGAGTGGCCTACACGCCGACTCAATATACCTACCATTTTGGGGACAATACCGAGTGGGGAGCT
GGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGCTGGGGTACGAACACACGTGAAGGACTGACTTGCCGTTATTGGTCGATATTCGTGGAC
ACAGAAATATTCTGTAGTGAGAAGAGTGCAGCTAAGTCTCAGAGATATACCGGTGTAACCGATTGGTGGTGTTCGCACAAGAAGGTTGTTGCGTTTTCGATCTCA
CAAGCAAGAAAAAGGCGAATCGATCAAGACTTCAAACGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAACTTCATCACCGAACCACTGCTCTGATACCACTTGTGATGAAACTGAAGCAAAAAACCAAAACTAAATCAGAGAGAAAGGATAAGAAATACACAATT
GTTTATAGTGGTTCAACCATCAGTGTGATGGCAAAAGCTTCATCTTCAAAGGGCAAAAGCCCATCTTCATCCTCAGCACCTTCGCAAATAAGTGCTGATCAATAC
GTTATGGATCTAGGGTTTACTCCGATAACCCGTTCTAGAGCAAGAGTGGCCTACACGCCGACTCAATATACCTACCATTTTGGGGACAATACCGAGTGGGGAGCT
GGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGCTGGGGTACGAACACACGTGAAGGACTGACTTGCCGTTATTGGTCGATATTCGTGGAC
ACAGAAATATTCTGTAGTGAGAAGAGTGCAGCTAAGTCTCAGAGATATACCGGTGTAACCGATTGGTGGTGTTCGCACAAGAAGGTTGTTGCGTTTTCGATCTCA
CAAGCAAGAAAAAGGCGAATCGATCAAGACTTCAAACGGTAA
Protein sequenceShow/hide protein sequence
MSELHHRTTALIPLVMKLKQKTKTKSERKDKKYTIVYSGSTISVMAKASSSKGKSPSSSSAPSQISADQYVMDLGFTPITRSRARVAYTPTQYTYHFGDNTEWGA
GNIITQDGIHSFPTLGWGTNTREGLTCRYWSIFVDTEIFCSEKSAAKSQRYTGVTDWWCSHKKVVAFSISQARKRRIDQDFKR