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Spg015417 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015417
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold10:13068612..13072948
RNA-Seq ExpressionSpg015417
SyntenySpg015417
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-0942.86Show/hide
Query:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        RK + SE+     +A  IW Q+ +P +GG+V++ENP  D   S YE++ +E S P++MSVM+ D+ T E+RMAE+E+K   L++
Subjt:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

KAA0051508.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-0849.35Show/hide
Query:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        E++Q S +A  I  Q++E  + G+V++ENPL+D S S+  ++K+ + PDVMSV+MADI TGE  MAEMERK   L++
Subjt:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-0850.65Show/hide
Query:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        E++Q S +A  I  Q++E  + G+V++ENPL+D S SS  ++K+ + PDVMSVMMADI T E  MAEMERK   L++
Subjt:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]4.3e-0942.86Show/hide
Query:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        RK + SE+     +A  IW Q+ +P +GG+V++ENP  D   S YE++ +E S P++MSVM+ D+ T E+RMAE+E+K   L++
Subjt:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

TYK24158.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-0849.35Show/hide
Query:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        E++Q S +A  I  Q++E  + G+V++ENPL+D S S+  ++K+ + PDVMSV+MADI TGE  MAEMERK   L++
Subjt:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

TrEMBL top hitse value%identityAlignment
A0A5A7TH26 Ty3-gypsy retrotransposon protein2.1e-0942.86Show/hide
Query:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        RK + SE+     +A  IW Q+ +P +GG+V++ENP  D   S YE++ +E S P++MSVM+ D+ T E+RMAE+E+K   L++
Subjt:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

A0A5A7U8B3 Ty3-gypsy retrotransposon protein1.8e-0849.35Show/hide
Query:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        E++Q S +A  I  Q++E  + G+V++ENPL+D S S+  ++K+ + PDVMSV+MADI TGE  MAEMERK   L++
Subjt:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein3.0e-0850.65Show/hide
Query:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        E++Q S +A  I  Q++E  + G+V++ENPL+D S SS  ++K+ + PDVMSVMMADI T E  MAEMERK   L++
Subjt:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

A0A5D3D1E5 Ribonuclease H2.1e-0942.86Show/hide
Query:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        RK + SE+     +A  IW Q+ +P +GG+V++ENP  D   S YE++ +E S P++MSVM+ D+ T E+RMAE+E+K   L++
Subjt:  RKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQA-KETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

A0A5D3DKU9 Ty3-gypsy retrotransposon protein1.8e-0849.35Show/hide
Query:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ
        E++Q S +A  I  Q++E  + G+V++ENPL+D S S+  ++K+ + PDVMSV+MADI TGE  MAEMERK   L++
Subjt:  EEEQASVIANMIWTQMVEPNQGGMVMQENPLFDYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAATTTAGAGGCATGGCCTCTCATTTTGGGGGACGACAAAAAGAAAGGAAGAAGAGAAAGCTGTCAGAAGACTCTGAAGATTGAAGCTCCTCCTGCAAAACTGAA
GATCGAAGCTCAGATCCTCGTCAAATTCAGCTACAGAACTGAAGAACAAGGCTCTGATCATCTTCAAGTGACTCCTACGTGGGACCAGTTACTGGCGGACGCTCCAAGGA
AATTCAGAAAATCAGAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGACTCAAATGGTAGAGCCAAACCAAGGTGGGATGGTCATGCAGGAAAATCCTTTATTT
GACTATTCTACTTCATCTTATGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCCGACATAGGTACAGGCGAAGAAAGAATGGCTGAAATGGA
AAGAAAGAGAGGAAGCTTAATCCAATTCGGCACCTTCGAACCTATTATCGTTTGGTCTCAACTAGAAGCCTTAGGAAATGACTTCCTAGAAAGGGCCCTCTACGAAGAAG
ATCTTCAAGAAAAGATTAGGCAAATTGAAGGCGAAGATGGAGGTTGGACACTCAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGCGCTGCAGCAAAGCAAGAAGC
AAAACTGCCACGTCACAGCTCGTTATCCATTTTAATGAACTGAAGTTTGTTAAGCTATTCTCGGATTTAAGAAGCAAGGAGAGCCATCCACGTGTCCAATTTGACCTAAT
TAGGGCTTGCTATCACTTTATAAAAGGAGGAGCCGTCTCAAGTCAAATTCATTCCATTCTGGGGAGGAACATTCCACTCTTGGATAGTTCATTTCCATTATTGGGAGCCG
AATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTAATTTAGAGGCATGGCCTCTCATTTTGGGGGACGACAAAAAGAAAGGAAGAAGAGAAAGCTGTCAGAAGACTCTGAAGATTGAAGCTCCTCCTGCAAAACTGAA
GATCGAAGCTCAGATCCTCGTCAAATTCAGCTACAGAACTGAAGAACAAGGCTCTGATCATCTTCAAGTGACTCCTACGTGGGACCAGTTACTGGCGGACGCTCCAAGGA
AATTCAGAAAATCAGAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGACTCAAATGGTAGAGCCAAACCAAGGTGGGATGGTCATGCAGGAAAATCCTTTATTT
GACTATTCTACTTCATCTTATGAGCAGGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCCGACATAGGTACAGGCGAAGAAAGAATGGCTGAAATGGA
AAGAAAGAGAGGAAGCTTAATCCAATTCGGCACCTTCGAACCTATTATCGTTTGGTCTCAACTAGAAGCCTTAGGAAATGACTTCCTAGAAAGGGCCCTCTACGAAGAAG
ATCTTCAAGAAAAGATTAGGCAAATTGAAGGCGAAGATGGAGGTTGGACACTCAATATATTGCTGAGCGACTTGAGGGAGCAAAATCTGCGCTGCAGCAAAGCAAGAAGC
AAAACTGCCACGTCACAGCTCGTTATCCATTTTAATGAACTGAAGTTTGTTAAGCTATTCTCGGATTTAAGAAGCAAGGAGAGCCATCCACGTGTCCAATTTGACCTAAT
TAGGGCTTGCTATCACTTTATAAAAGGAGGAGCCGTCTCAAGTCAAATTCATTCCATTCTGGGGAGGAACATTCCACTCTTGGATAGTTCATTTCCATTATTGGGAGCCG
AATAG
Protein sequenceShow/hide protein sequence
MINLEAWPLILGDDKKKGRRESCQKTLKIEAPPAKLKIEAQILVKFSYRTEEQGSDHLQVTPTWDQLLADAPRKFRKSEEEQASVIANMIWTQMVEPNQGGMVMQENPLF
DYSTSSYEQAKETSDPDVMSVMMADIGTGEERMAEMERKRGSLIQFGTFEPIIVWSQLEALGNDFLERALYEEDLQEKIRQIEGEDGGWTLNILLSDLREQNLRCSKARS
KTATSQLVIHFNELKFVKLFSDLRSKESHPRVQFDLIRACYHFIKGGAVSSQIHSILGRNIPLLDSSFPLLGAE