; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015419 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015419
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold10:10419672..10425320
RNA-Seq ExpressionSpg015419
SyntenySpg015419
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025163.1 hypothetical protein E6C27_scaffold2405G00100 [Cucumis melo var. makuwa]1.9e-0743.12Show/hide
Query:  TGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKT-----------------VSDKMNFEDGFQRLFNVQEGQRVS---LEEDDVH
        TGFSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKT                 V +++   D         E    S   +  DDV 
Subjt:  TGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKT-----------------VSDKMNFEDGFQRLFNVQEGQRVS---LEEDDVH

Query:  WLHTIFRAK
        WLH +FRAK
Subjt:  WLHTIFRAK

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]2.7e-0662.07Show/hide
Query:  SISQFTPSTGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTV
        S  + T STGFSSKPGG LVFS  LSIL    +++    +WPRGN  SLQTGELDKTV
Subjt:  SISQFTPSTGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]4.6e-0633.71Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDGFQRLFNVQEGQRVSLEEDDVHWLHTIFRAKLNHLRESLKE
        ST FSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKTV                    R SL             + L+ LR+    
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDGFQRLFNVQEGQRVSLEEDDVHWLHTIFRAKLNHLRESLKE

Query:  EEEEVYWSFEVEDERGKLMQKTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRAN
                                              N   + A        GGPHYDKDDGN  R PLHRR +
Subjt:  EEEEVYWSFEVEDERGKLMQKTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRAN

KAA0066850.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-0667.31Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-0667.31Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS

TrEMBL top hitse value%identityAlignment
A0A5A7SKG8 Uncharacterized protein9.1e-0843.12Show/hide
Query:  TGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKT-----------------VSDKMNFEDGFQRLFNVQEGQRVS---LEEDDVH
        TGFSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKT                 V +++   D         E    S   +  DDV 
Subjt:  TGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKT-----------------VSDKMNFEDGFQRLFNVQEGQRVS---LEEDDVH

Query:  WLHTIFRAK
        WLH +FRAK
Subjt:  WLHTIFRAK

A0A5A7UEC1 Uncharacterized protein1.3e-0662.07Show/hide
Query:  SISQFTPSTGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTV
        S  + T STGFSSKPGG LVFS  LSIL    +++    +WPRGN  SLQTGELDKTV
Subjt:  SISQFTPSTGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTV

A0A5A7VGQ5 Uncharacterized protein2.2e-0633.71Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDGFQRLFNVQEGQRVSLEEDDVHWLHTIFRAKLNHLRESLKE
        ST FSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKTV                    R SL             + L+ LR+    
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDGFQRLFNVQEGQRVSLEEDDVHWLHTIFRAKLNHLRESLKE

Query:  EEEEVYWSFEVEDERGKLMQKTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRAN
                                              N   + A        GGPHYDKDDGN  R PLHRR +
Subjt:  EEEEVYWSFEVEDERGKLMQKTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRAN

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein2.2e-0667.31Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein2.2e-0667.31Show/hide
Query:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS
        STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Subjt:  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGACACACTATCTATGTTGCCCACATAGACATGGTGCAGATAGCATATCCCAATTTACGCCCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTT
CTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAATCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTG
ACAAAATGAATTTCGAAGATGGTTTCCAACGGTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACACCATCTTTCGGGCT
AAGCTAAACCATTTGAGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGTATACTGGAGTTTTGAGGTTGAAGATGAGAGGGGAAAGCTTATGCAAAAAACCAGAGCACAGAA
TTTTCGCGCAAATCTGAAGGGTCTCTGGCCAAGAGGAAATAGGCCGAGTCTGGAGGCCAGGGAACTAGCCCAAGGATTGTTGGGCGGGCCCCACTACGACAAAGACGATG
GGAATGTTGGGCGGGTCCCACTACATCGTAGAGCAAACGTTGGTCGTATTAGGCGTGCCCTACACAACGTAGATTTGTCATGTTCAACGGTTCATGAAGGTCAACAAGTA
TCGTTAGAGGAGGACGTGGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCAAGCAGGTAAGAATCCACGATCCTCGAAGATTCGATGCCGGATTGGGGATTTTCGGAT
GATTCTGTGCAAACCCCGCGAATCTCGATATTCTGTCGGAAAGCCCAGTTGCGGCCGCATCTCGGGCGCATTTTCCTCTGTGTTCTACTTTGACAATTTTGTCTACAGCA
TGGGGCTTCTTTCCTTATATGGCTTTGCGGGTGCAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGACACACTATCTATGTTGCCCACATAGACATGGTGCAGATAGCATATCCCAATTTACGCCCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTT
CTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAATCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTG
ACAAAATGAATTTCGAAGATGGTTTCCAACGGTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACACCATCTTTCGGGCT
AAGCTAAACCATTTGAGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGTATACTGGAGTTTTGAGGTTGAAGATGAGAGGGGAAAGCTTATGCAAAAAACCAGAGCACAGAA
TTTTCGCGCAAATCTGAAGGGTCTCTGGCCAAGAGGAAATAGGCCGAGTCTGGAGGCCAGGGAACTAGCCCAAGGATTGTTGGGCGGGCCCCACTACGACAAAGACGATG
GGAATGTTGGGCGGGTCCCACTACATCGTAGAGCAAACGTTGGTCGTATTAGGCGTGCCCTACACAACGTAGATTTGTCATGTTCAACGGTTCATGAAGGTCAACAAGTA
TCGTTAGAGGAGGACGTGGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCAAGCAGGTAAGAATCCACGATCCTCGAAGATTCGATGCCGGATTGGGGATTTTCGGAT
GATTCTGTGCAAACCCCGCGAATCTCGATATTCTGTCGGAAAGCCCAGTTGCGGCCGCATCTCGGGCGCATTTTCCTCTGTGTTCTACTTTGACAATTTTGTCTACAGCA
TGGGGCTTCTTTCCTTATATGGCTTTGCGGGTGCAACTTGA
Protein sequenceShow/hide protein sequence
MAETHYLCCPHRHGADSISQFTPSTGFSSKPGGSLVFSGVLSILGCTSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDGFQRLFNVQEGQRVSLEEDDVHWLHTIFRA
KLNHLRESLKEEEEEVYWSFEVEDERGKLMQKTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRANVGRIRRALHNVDLSCSTVHEGQQV
SLEEDVVRWLHAISRTKQAGKNPRSSKIRCRIGDFRMILCKPRESRYSVGKPSCGRISGAFSSVFYFDNFVYSMGLLSLYGFAGAT