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Spg015423 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015423
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:11550930..11556509
RNA-Seq ExpressionSpg015423
SyntenySpg015423
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.7e-1755.56Show/hide
Query:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG
        PRGNR SLQ  +L KT                 VEIELP+PDTLPTSAESS S+S+T +ELY ESVH+E  G    +  DDV WLHA+FR + TGGPGG
Subjt:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.5e-1753.06Show/hide
Query:  PRGNRSSLQVRKLVKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGG
        PRGNR +L   KL KTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESVH+                  EG    +  DD+ WLHA+F  +  G PGG
Subjt:  PRGNRSSLQVRKLVKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]6.3e-1638.92Show/hide
Query:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSS
        I+  REPRI      G          F F +              PRGNRSSLQ  +L KT                 VEIELPVPDTLPTSAES  S+S
Subjt:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSS

Query:  NTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGGAKEITEQ
        +TW+ELY E VH+                  EG    +  DDV WLH +FR ++ GGPGG   +TE+
Subjt:  NTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGGAKEITEQ

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.1e-1543.85Show/hide
Query:  FFRPRGNRSSLQVRKLVKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE---------------------GQRVSLEED
        +  PRGNR SLQ  +L KTV                IELPVPDTLPTSAESS S+S+TW+ELY ESVH+E                     G    +  D
Subjt:  FFRPRGNRSSLQVRKLVKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE---------------------GQRVSLEED

Query:  DVRWLHAIFRTELTGGPGGAKEITEQKCKR
        DV WLHA+FR +  GGPGG     E   +R
Subjt:  DVRWLHAIFRTELTGGPGGAKEITEQKCKR

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.7e-1755.56Show/hide
Query:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG
        PRGNR SLQ  +L KT                 VEIELP+PDTLPTSAESS S+S+T +ELY ESVH+E  G    +  DDV WLHA+FR + TGGPGG
Subjt:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase2.8e-1755.56Show/hide
Query:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG
        PRGNR SLQ  +L KT                 VEIELP+PDTLPTSAESS S+S+T +ELY ESVH+E  G    +  DDV WLHA+FR + TGGPGG
Subjt:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein7.2e-1853.06Show/hide
Query:  PRGNRSSLQVRKLVKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGG
        PRGNR +L   KL KTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESVH+                  EG    +  DD+ WLHA+F  +  G PGG
Subjt:  PRGNRSSLQVRKLVKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGG

A0A5A7VIY9 Uncharacterized protein3.0e-1638.92Show/hide
Query:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSS
        I+  REPRI      G          F F +              PRGNRSSLQ  +L KT                 VEIELPVPDTLPTSAES  S+S
Subjt:  IKGSREPRICVVCVRGISGQIGWESRFHFFR--------------PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSS

Query:  NTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGGAKEITEQ
        +TW+ELY E VH+                  EG    +  DDV WLH +FR ++ GGPGG   +TE+
Subjt:  NTWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRTELTGGPGGAKEITEQ

A0A5D3CJX3 CCHC-type domain-containing protein5.2e-1643.85Show/hide
Query:  FFRPRGNRSSLQVRKLVKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE---------------------GQRVSLEED
        +  PRGNR SLQ  +L KTV                IELPVPDTLPTSAESS S+S+TW+ELY ESVH+E                     G    +  D
Subjt:  FFRPRGNRSSLQVRKLVKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE---------------------GQRVSLEED

Query:  DVRWLHAIFRTELTGGPGGAKEITEQKCKR
        DV WLHA+FR +  GGPGG     E   +R
Subjt:  DVRWLHAIFRTELTGGPGGAKEITEQKCKR

A0A5D3D150 Reverse transcriptase2.8e-1755.56Show/hide
Query:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG
        PRGNR SLQ  +L KT                 VEIELP+PDTLPTSAESS S+S+T +ELY ESVH+E  G    +  DDV WLHA+FR + TGGPGG
Subjt:  PRGNRSSLQVRKLVKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIE--GQRVSLEEDDVRWLHAIFRTELTGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTCCACGCCTAGTATGACAGAGTTTGCTCTGCTGAGCGTATTGAGAGGACTCTACGCCGGTATGACTAGAGATAAGGGTACAGGTGTTGGGCTGAATGTGGTGGT
TGAGACGCTTGAGTCTCCCATCTGGATTCTGGTGGTGATGTGGAAGTTGATCGAGTGTTCGGAGCGCAAAAAGTGGCAAAGGAAGCGGAAAAGAATCGAGTCGAGACCTG
CAGCAGCCTTTAGATCACCCGAGAGCACAGCGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAA
TCTCGTTTTCATTTCTTCCGGCCAAGAGGAAATAGGTCGAGTCTGCAGGTCAGAAAACTAGTTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTC
ACGCCATCTTCCGGACTGAGTTAACAGGTGGTCCGGGAGGGGCAAAAGAAATAACAGAGCAGAAATGTAAGCGGATAAAGAAGACAGATTGGAAACAGGCGTTGGTTAAG
ACTTCTGTAATTGTTAGAAAGATGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATTCCACGCCTAGTATGACAGAGTTTGCTCTGCTGAGCGTATTGAGAGGACTCTACGCCGGTATGACTAGAGATAAGGGTACAGGTGTTGGGCTGAATGTGGTGGT
TGAGACGCTTGAGTCTCCCATCTGGATTCTGGTGGTGATGTGGAAGTTGATCGAGTGTTCGGAGCGCAAAAAGTGGCAAAGGAAGCGGAAAAGAATCGAGTCGAGACCTG
CAGCAGCCTTTAGATCACCCGAGAGCACAGCGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAA
TCTCGTTTTCATTTCTTCCGGCCAAGAGGAAATAGGTCGAGTCTGCAGGTCAGAAAACTAGTTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTC
ACGCCATCTTCCGGACTGAGTTAACAGGTGGTCCGGGAGGGGCAAAAGAAATAACAGAGCAGAAATGTAAGCGGATAAAGAAGACAGATTGGAAACAGGCGTTGGTTAAG
ACTTCTGTAATTGTTAGAAAGATGCTCTAG
Protein sequenceShow/hide protein sequence
MYSTPSMTEFALLSVLRGLYAGMTRDKGTGVGLNVVVETLESPIWILVVMWKLIECSERKKWQRKRKRIESRPAAAFRSPESTARKIKGSREPRICVVCVRGISGQIGWE
SRFHFFRPRGNRSSLQVRKLVKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVHIEGQRVSLEEDDVRWLHAIFRTELTGGPGGAKEITEQKCKRIKKTDWKQALVK
TSVIVRKML