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Spg015427 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015427
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold10:13532799..13534585
RNA-Seq ExpressionSpg015427
SyntenySpg015427
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1056.96Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDND VVEIELP+PDTL TSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.7e-1166.67Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAVVEIELPVPDTL TSAES  S+S ST        +  DDV WLHA+FR K AGG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.8e-1262.03Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAVVEIELPVPDTL TSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.7e-1166.67Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAV EIELPVPDTLSTSAESS S+S S         +  DDV WLHAIFR K+ GG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.8e-1262.03Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAVVEIELPVPDTL TSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.2e-1056.96Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDND VVEIELP+PDTL TSAESS S+SS+  +   E   V        +  DDV WLHA+FR K  GG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGLGG

A0A5A7VMG9 Reverse transcriptase2.8e-1262.03Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAVVEIELPVPDTL TSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein8.2e-1266.67Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAVVEIELPVPDTL TSAES  S+S ST        +  DDV WLHA+FR K AGG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG

A0A5D3BNX1 Zf-CCHC domain-containing protein8.2e-1266.67Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAV EIELPVPDTLSTSAESS S+S S         +  DDV WLHAIFR K+ GG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG

A0A5D3DX39 Reverse transcriptase2.8e-1262.03Show/hide
Query:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        L TL+VLRDNDAVVEIELPVPDTL TSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  LLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGAAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTTA
TATTCTGTTGTTGACGTTGAATGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTCTGCTGAAAGTTCCAGATCAAGCT
CCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGAAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTTA
TATTCTGTTGTTGACGTTGAATGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACGTCTGCTGAAAGTTCCAGATCAAGCT
CCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGG
Protein sequenceShow/hide protein sequence
MENRAQDFRAKKEDLWFSLVFRAFWGVQVESEALFGYILLLTLNVLRDNDAVVEIELPVPDTLSTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG