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Spg015434 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015434
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:15006916..15010015
RNA-Seq ExpressionSpg015434
SyntenySpg015434
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]2.9e-2548.89Show/hide
Query:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD
        VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  +L +VFG+D A GG+  TP+E+   S+   D EE DM ++
Subjt:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD

Query:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         +D  +P+P  + P S E+   TPT  A  AG  R
Subjt:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-2446.81Show/hide
Query:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE
        L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+ F +  +L +VFG+D A GGR    +E+   S+   D EE
Subjt:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE

Query:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         DM+++ +D  +P+P  + P S E+   T       AG SR
Subjt:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]5.9e-2649.63Show/hide
Query:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD
        VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  +L +VFG+D A GG+  TP+E+   S+   D EE DM ++
Subjt:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD

Query:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         +D  +P+P  + P S E+   TPT  A  AG SR
Subjt:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.9e-2446.81Show/hide
Query:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE
        L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+ F +  +L +VFG+D A GGR    +E+   S+   D EE
Subjt:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE

Query:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         DM+++ +D  +P+P  + P S E+   T       AG SR
Subjt:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]8.5e-2549.62Show/hide
Query:  RVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNV
        RVK+LKKQY  IVEMMGP+CS FGWNE+RKCIEAEK + D  V+    A+GL N+ F +  +L +VFG+D A GGR  TP+E+   S    D+EE DM++
Subjt:  RVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNV

Query:  DYKDCYVPSPPVINPISEEEFCGTPTGRACGAG
        + +D  +P+P  + P S E+   T T  A  AG
Subjt:  DYKDCYVPSPPVINPISEEEFCGTPTGRACGAG

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like9.1e-2546.81Show/hide
Query:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE
        L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+ F +  +L +VFG+D A GGR    +E+   S+   D EE
Subjt:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE

Query:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         DM+++ +D  +P+P  + P S E+   T       AG SR
Subjt:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein1.4e-2548.89Show/hide
Query:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD
        VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  +L +VFG+D A GG+  TP+E+   S+   D EE DM ++
Subjt:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD

Query:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         +D  +P+P  + P S E+   TPT  A  AG  R
Subjt:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

A0A5D3BC95 Retrotransposon protein9.1e-2546.81Show/hide
Query:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE
        L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+ F +  +L +VFG+D A GGR    +E+   S+   D EE
Subjt:  LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE

Query:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         DM+++ +D  +P+P  + P S E+   T       AG SR
Subjt:  -DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

A0A5D3C7T4 Uncharacterized protein2.0e-2448.46Show/hide
Query:  KQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCY
        KQY  I EMMGPACSGFGWNE +KCIE EK + D WV+    A+GL N+ F +  +L +VFG+D A GGR  TP+E++  S+   D EE DM+++ +D  
Subjt:  KQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCY

Query:  VPSPPVINPISEEEFCGTPTGRACGAGPSR
        +P+P  + P S E+   TPT     AG SR
Subjt:  VPSPPVINPISEEEFCGTPTGRACGAGPSR

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein2.8e-2649.63Show/hide
Query:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD
        VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  +L +VFG+D A GG+  TP+E+   S+   D EE DM ++
Subjt:  VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVD

Query:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR
         +D  +P+P  + P S E+   TPT  A  AG SR
Subjt:  YKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G27260.1 unknown protein6.7e-0432.47Show/hide
Query:  RVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVEA----KGLRNRSFLWLNELALVFGKDSARGGRA
        R+K LK QY + +++     SGFGW+   K   A  ++   +++A    K LR  +F + +EL ++FG+  A G  A
Subjt:  RVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVEA----KGLRNRSFLWLNELALVFGKDSARGGRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCATTATCTTTGCGCCAACCTCCTATTTGTACCAAGTGGACTAAGCACTACACAAGGACTACATCCTCCTCCAGTGTCCAGACATGTTTCTCCTTCTTGGATCCT
GATCCTGATGCGGCCATCTACTTATGCAATCACAATAGTTATTAGGTTAATGAGATCTTTCGTAACATACAACACAGTACGTGCACGTGCTCGTAACGATTTCGGCGGGA
CGAGATCGCAACGTACTCATAACTCGTTACGAGCACGTGCACGGATGAGAGATGGAGGTGTTCAAGATGGCCGCATCGGGATCATGATCCAAGAAGGAGAAACATGTCTG
GAGATCGGAGGAGGATGCAGTCCTTGTGTAGTGCCTAGTCCACTTGGTACAAATAAGAGGGTAAAGCTCCTGAAAAAACAATACATGACCATTGTTGAGATGATGGGACC
AGCTTGTAGTGGGTTCGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGAAGATCTCTGATGCGTGGGTCGAGGCTAAGGGCCTCCGTAACCGGTCATTCTTGT
GGCTTAATGAGCTGGCGTTGGTGTTTGGGAAGGACAGCGCAAGAGGGGGGAGGGCCCCCACTCCTATTGAGCTTACACCGGACTCGAAACCGGTAGCTGACCTTGAAGAG
GACATGAACGTAGACTATAAAGATTGTTACGTCCCCAGTCCACCTGTTATTAATCCCATTTCAGAGGAAGAATTTTGTGGGACACCAACTGGCAGAGCATGTGGTGCAGG
ACCGTCTAGGACACCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCATTATCTTTGCGCCAACCTCCTATTTGTACCAAGTGGACTAAGCACTACACAAGGACTACATCCTCCTCCAGTGTCCAGACATGTTTCTCCTTCTTGGATCCT
GATCCTGATGCGGCCATCTACTTATGCAATCACAATAGTTATTAGGTTAATGAGATCTTTCGTAACATACAACACAGTACGTGCACGTGCTCGTAACGATTTCGGCGGGA
CGAGATCGCAACGTACTCATAACTCGTTACGAGCACGTGCACGGATGAGAGATGGAGGTGTTCAAGATGGCCGCATCGGGATCATGATCCAAGAAGGAGAAACATGTCTG
GAGATCGGAGGAGGATGCAGTCCTTGTGTAGTGCCTAGTCCACTTGGTACAAATAAGAGGGTAAAGCTCCTGAAAAAACAATACATGACCATTGTTGAGATGATGGGACC
AGCTTGTAGTGGGTTCGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGAAGATCTCTGATGCGTGGGTCGAGGCTAAGGGCCTCCGTAACCGGTCATTCTTGT
GGCTTAATGAGCTGGCGTTGGTGTTTGGGAAGGACAGCGCAAGAGGGGGGAGGGCCCCCACTCCTATTGAGCTTACACCGGACTCGAAACCGGTAGCTGACCTTGAAGAG
GACATGAACGTAGACTATAAAGATTGTTACGTCCCCAGTCCACCTGTTATTAATCCCATTTCAGAGGAAGAATTTTGTGGGACACCAACTGGCAGAGCATGTGGTGCAGG
ACCGTCTAGGACACCGTAG
Protein sequenceShow/hide protein sequence
MSHYLCANLLFVPSGLSTTQGLHPPPVSRHVSPSWILILMRPSTYAITIVIRLMRSFVTYNTVRARARNDFGGTRSQRTHNSLRARARMRDGGVQDGRIGIMIQEGETCL
EIGGGCSPCVVPSPLGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVEAKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE
DMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSRTP