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Spg015452 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015452
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold10:13037359..13043010
RNA-Seq ExpressionSpg015452
SyntenySpg015452
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.8e-0677.5Show/hide
Query:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS
        PRGNRP+L T +L KTVEIELPVPDTLP SAESSKS S++
Subjt:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]2.0e-0645.65Show/hide
Query:  FQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNS
        F+NEEF  Y+IN G VLR                 PRGNRPSLQT EL KT                 VEIELP P+ LP SAESS+S S++
Subjt:  FQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNS

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]1.3e-0575Show/hide
Query:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS
        PRGNRPSLQ  +L KTVEIELP+PDTLP S+ESSKS S++
Subjt:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]9.9e-0661.11Show/hide
Query:  EFDTYYINCGQVLRPRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS
        ++ T ++N    + PRGNRPS QT +L KTVEIELPVPDTLP SAESS S S++
Subjt:  EFDTYYINCGQVLRPRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]9.9e-0644.44Show/hide
Query:  VRFRGFQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNSRG
        V  R F +E+F  Y+IN G VLR                 PRGNR SLQT +L KT                 VEIELPVPDT P SAESS+S S+S G
Subjt:  VRFRGFQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNSRG

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein2.8e-0677.5Show/hide
Query:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS
        PRGNRP+L T +L KTVEIELPVPDTLP SAESSKS S++
Subjt:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS

A0A5A7UFD2 Uncharacterized protein9.7e-0745.65Show/hide
Query:  FQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNS
        F+NEEF  Y+IN G VLR                 PRGNRPSLQT EL KT                 VEIELP P+ LP SAESS+S S++
Subjt:  FQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNS

A0A5A7V2F2 Uncharacterized protein6.3e-0675Show/hide
Query:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS
        PRGNRPSLQ  +L KTVEIELP+PDTLP S+ESSKS S++
Subjt:  PRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS

A0A5D3BET3 Uncharacterized protein4.8e-0661.11Show/hide
Query:  EFDTYYINCGQVLRPRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS
        ++ T ++N    + PRGNRPS QT +L KTVEIELPVPDTLP SAESS S S++
Subjt:  EFDTYYINCGQVLRPRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNS

A0A5D3BQ75 Uncharacterized protein4.8e-0644.44Show/hide
Query:  VRFRGFQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNSRG
        V  R F +E+F  Y+IN G VLR                 PRGNR SLQT +L KT                 VEIELPVPDT P SAESS+S S+S G
Subjt:  VRFRGFQNEEFDTYYINCGQVLR-----------------PRGNRPSLQTRELAKT-----------------VEIELPVPDTLPMSAESSKSTSNSRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCGGCCTACTTTGCGAACAAGGCAAACGACGTGATCCTTGATCGTTCATGTAGAGACATGCAAGTAGGGGCATCGTGTGTACGTTTTAGAGGATTCCAAAATGA
AGAGTTTGATACATATTACATTAATTGTGGTCAAGTATTGAGGCCAAGAGGAAATAGGCCGAGTTTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGG
TACCTGATACACTGCCAATGTCTGCTGAAAGCTCCAAGTCGACTTCCAATTCCAGAGGTCCGCCCCAACAAGCTACGATCAAGAAAGACAATGTTGGAGCAAAACCTAAG
AAACCCTATCCATTACGGAGTTCGCCCTGCTACCCCATACCCAAGCCCTCCAAAGGGATGGTTACACTATTGGCAACACGCAGGTGGAGCATGAAATCTCAGAACGTACC
AATGGAGGAGACCGTAGGATGTGTTGACACACTTCCTGCTCCCACTTATTATAAACACTCTATCCATTCACCTTGGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCGGCCTACTTTGCGAACAAGGCAAACGACGTGATCCTTGATCGTTCATGTAGAGACATGCAAGTAGGGGCATCGTGTGTACGTTTTAGAGGATTCCAAAATGA
AGAGTTTGATACATATTACATTAATTGTGGTCAAGTATTGAGGCCAAGAGGAAATAGGCCGAGTTTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGG
TACCTGATACACTGCCAATGTCTGCTGAAAGCTCCAAGTCGACTTCCAATTCCAGAGGTCCGCCCCAACAAGCTACGATCAAGAAAGACAATGTTGGAGCAAAACCTAAG
AAACCCTATCCATTACGGAGTTCGCCCTGCTACCCCATACCCAAGCCCTCCAAAGGGATGGTTACACTATTGGCAACACGCAGGTGGAGCATGAAATCTCAGAACGTACC
AATGGAGGAGACCGTAGGATGTGTTGACACACTTCCTGCTCCCACTTATTATAAACACTCTATCCATTCACCTTGGTATTGA
Protein sequenceShow/hide protein sequence
MDAAYFANKANDVILDRSCRDMQVGASCVRFRGFQNEEFDTYYINCGQVLRPRGNRPSLQTRELAKTVEIELPVPDTLPMSAESSKSTSNSRGPPQQATIKKDNVGAKPK
KPYPLRSSPCYPIPKPSKGMVTLLATRRWSMKSQNVPMEETVGCVDTLPAPTYYKHSIHSPWY