; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015460 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015460
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:15562077..15566781
RNA-Seq ExpressionSpg015460
SyntenySpg015460
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]1.5e-0931.33Show/hide
Query:  ILRQTQSSKRPGNL-------VSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGL---NHITDTCN
        +L+  Q   +PGN+       + Q +WK P  N  K+N DAA + KD + GLG IVRD+ G ++   I Q   +  +   EA AI  GL   N I+ +  
Subjt:  ILRQTQSSKRPGNL-------VSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGL---NHITDTCN

Query:  RLQIPLQIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA
             L +ESD  EV+++L       +++     D+   +     ++FS   R  NT  H +AK A
Subjt:  RLQIPLQIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.6e-1138.38Show/hide
Query:  QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLS
        +W  PP NCWK+N+DA+W+++   GG+GWI+ D  G ++     +I +K  I  LE   I+ GL  I     + + P+ +ESD +EVI+++K E  DL+
Subjt:  QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.0e-1433.76Show/hide
Query:  HILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIE
        H++R+ + +       + AQWK P  N WK+N++AAW    + GG+GWI+RD  G VI      I  +  I  LE  AI EGL  I     R   P+ +E
Subjt:  HILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIE

Query:  SDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA
        SD LE I +L  + +D +++    ++I+ +      +   H SR  N   H +A+RA
Subjt:  SDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.0e-1533.33Show/hide
Query:  QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGL
        +T  S     L ++ +W+ PP + W +N+DA+W+    RGG+GWI+R  +G ++      ++    +K LEA AILEGL ++T+    +  PL IE+D  
Subjt:  QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGL

Query:  EVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV
        EV  +L  + EDL+      ++I  + DS   + F+   R  N   H +A+RA+V+
Subjt:  EVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.2e-1536.11Show/hide
Query:  AQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHI-TDTCNRLQ----IPLQIESDGLEVIKVLKGE
        A+WK P  N WK+N+DAAW    + GG+GWI+RD  G VI  +   I  +  I  LE  AI EGL  I  + C  +Q     P+ +ESD LE I +L  +
Subjt:  AQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHI-TDTCNRLQ----IPLQIESDGLEVIKVLKGE

Query:  AEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA
         +D +++    ++I+ + +    +   H SR  N   H +A+RA
Subjt:  AEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.6e-1533.76Show/hide
Query:  HILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIE
        H++R+ + +       + AQWK P  N WK+N++AAW    + GG+GWI+RD  G VI      I  +  I  LE  AI EGL  I     R   P+ +E
Subjt:  HILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIE

Query:  SDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA
        SD LE I +L  + +D +++    ++I+ +      +   H SR  N   H +A+RA
Subjt:  SDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA

A0A6J1CQG0 uncharacterized protein LOC1110132167.6e-1238.38Show/hide
Query:  QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLS
        +W  PP NCWK+N+DA+W+++   GG+GWI+ D  G ++     +I +K  I  LE   I+ GL  I     + + P+ +ESD +EVI+++K E  DL+
Subjt:  QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLS

A0A6J1DNV9 uncharacterized protein LOC1110224031.9e-1533.33Show/hide
Query:  QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGL
        +T  S     L ++ +W+ PP + W +N+DA+W+    RGG+GWI+R  +G ++      ++    +K LEA AILEGL ++T+    +  PL IE+D  
Subjt:  QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGL

Query:  EVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV
        EV  +L  + EDL+      ++I  + DS   + F+   R  N   H +A+RA+V+
Subjt:  EVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV

A0A6J1DSV1 uncharacterized protein LOC1110236082.5e-1536.11Show/hide
Query:  AQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHI-TDTCNRLQ----IPLQIESDGLEVIKVLKGE
        A+WK P  N WK+N+DAAW    + GG+GWI+RD  G VI  +   I  +  I  LE  AI EGL  I  + C  +Q     P+ +ESD LE I +L  +
Subjt:  AQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHI-TDTCNRLQ----IPLQIESDGLEVIKVLKGE

Query:  AEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA
         +D +++    ++I+ + +    +   H SR  N   H +A+RA
Subjt:  AEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA

A0A803QL79 Uncharacterized protein2.4e-1030.5Show/hide
Query:  YCDERLVPHPPLIPY---------EEQLRPQHILRQTQSSKRPGNLV--------SQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFE
        Y  ++  P P L+ Y           Q R     +Q  SS RP N          +Q  W  PPP   K+N+DAA N   S  GLG ++RDSNG ++   
Subjt:  YCDERLVPHPPLIPY---------EEQLRPQHILRQTQSSKRPGNLV--------SQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFE

Query:  IHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPL-QIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV
           I  ++  + +EA A+   L     T  +LQ+P+  IE+D L V++ LK     LS       D++ +  +    + SH  R  N + H +AK A  V
Subjt:  IHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPL-QIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-0531.58Show/hide
Query:  QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIP-LQIESDGLEVIKVLKGE
        QWK PP    K N+DA W  ++ R G+GWI+R+ +G V+      + +      LEA   LE L     T +R     +  ESD   ++ +L  +
Subjt:  QWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIP-LQIESDGLEVIKVLKGE

AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0728.14Show/hide
Query:  EEQLRPQHILRQTQS--SKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCN
        E+ L    I  + +S  +K   N  S  +W+ PP    K N+DA WN+ + R G+GW++R+  G V       + K  ++  LEA   LE +     + +
Subjt:  EEQLRPQHILRQTQS--SKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCN

Query:  RLQIPLQI-ESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA
        R Q    I ESD   +I++L  + E    LK    D+  +      ++F    R  NT    VA+ +
Subjt:  RLQIPLQI-ESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0422.91Show/hide
Query:  QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGL
        + Q+  R  +     +W  P  +  K N DA+ +++++  GLGWI+R+S G VI   + +   +   +  E   ++  +       ++  I    E D  
Subjt:  QTQSSKRPGNLVSQAQWKKPPPNCWKMNSDAAWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGL

Query:  EVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVVSAPQPVSSSSSPFISGRINASLS
         + +++  ++ +   L+ F D I +   S  S+EFS   R  N     +AK+A   +    +  S   F+S  +N   S
Subjt:  EVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRLLNTDTHCVAKRAAVVSAPQPVSSSSSPFISGRINASLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGACTTTGGTCGCACTCCCAACAATCCTCCCCTCGAACAAAGCCTCAATGCTTTACCGAGAGTTTACTCTCATCCAAGACACAACTCCTTTCCTCCGGAGTATAC
TGCCTGCCCAGAGCTCAACAACGGATTTCCCCATGACTACTTAGGCTCACAACTTCTTTGTTCGGTACCTGAGGATTTTATCCGACACGGCTATGTTTGGGGTATGGCTC
TGATACCACATAACCTGCAGTTGCAGAAGACTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGATGGTAGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGG
ATAGCCAATTTCGATCAGTCCGATCAAGATCCTTTAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCTCAGTTGTCAGACGCTCGAA
TGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAGTTGCTAAGGTGAAAGGTCAGGTCTCTAGCTTGGTAACAGGTTTGAATAGAGGAT
TCAAGCCATTCTCAAAGTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGTGGGAGACGAGATCGTTGTTTTGTCTCCAAGTAGGAAATTGTCAGGA
CTTGTGGAGACAAAACTCCATCCTTACAAGTTTAACCTACAGTTGCAGAAGATTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGGTGTCTTCTATCGGCT
TGGAGATAGTTCTAGGACTTCCTTCTCTATTGATCCAAGGATCTTGGTCTATTGTGATGAGAGACTCGTTCCCCACCCTCCATTGATACCCTATGAGGAACAACTCAGAC
CCCAGCATATACTTCGTCAGACCCAATCGTCGAAAAGGCCAGGGAACCTCGTGAGTCAAGCGCAATGGAAGAAGCCTCCTCCAAATTGCTGGAAAATGAACTCAGACGCC
GCTTGGAACAAGAAAGATAGCAGGGGAGGACTCGGGTGGATAGTGCGTGACTCTAACGGAGCCGTGATCTGTTTCGAAATACATCAAATTGATAAGAAGTGGGCAATCAA
GACATTGGAAGCAAGAGCTATTCTCGAGGGGCTTAATCATATCACTGATACCTGTAACCGGCTCCAAATTCCTCTTCAGATCGAGTCGGATGGCTTAGAAGTGATAAAAG
TCCTCAAAGGAGAAGCTGAAGACCTCTCTGATTTGAAGATTTTCACAGACGACATTTACGCCATCGCCGATAGCTCTGTCTCCATGGAATTCAGCCATTGTAGTCGCCTT
TTGAACACAGACACGCACTGTGTTGCGAAAAGAGCTGCAGTTGTGTCTGCTCCTCAACCGGTTTCTTCGTCGTCTTCTCCGTTTATTTCCGGTAGGATCAACGCCTCTCT
CTCGCGGGAAAAGGAGCGTGCTTTTTTGGGCTCCAAATATCCCTTCTTGGTTTTACCCTTTTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGACTTTGGTCGCACTCCCAACAATCCTCCCCTCGAACAAAGCCTCAATGCTTTACCGAGAGTTTACTCTCATCCAAGACACAACTCCTTTCCTCCGGAGTATAC
TGCCTGCCCAGAGCTCAACAACGGATTTCCCCATGACTACTTAGGCTCACAACTTCTTTGTTCGGTACCTGAGGATTTTATCCGACACGGCTATGTTTGGGGTATGGCTC
TGATACCACATAACCTGCAGTTGCAGAAGACTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGATGGTAGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGG
ATAGCCAATTTCGATCAGTCCGATCAAGATCCTTTAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCTCAGTTGTCAGACGCTCGAA
TGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAGAGCAGTTGCTAAGGTGAAAGGTCAGGTCTCTAGCTTGGTAACAGGTTTGAATAGAGGAT
TCAAGCCATTCTCAAAGTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGTGGGAGACGAGATCGTTGTTTTGTCTCCAAGTAGGAAATTGTCAGGA
CTTGTGGAGACAAAACTCCATCCTTACAAGTTTAACCTACAGTTGCAGAAGATTGGACGTAGTCCCGAGCTTGGGGCGAACCAGTATATTTTCGGTGTCTTCTATCGGCT
TGGAGATAGTTCTAGGACTTCCTTCTCTATTGATCCAAGGATCTTGGTCTATTGTGATGAGAGACTCGTTCCCCACCCTCCATTGATACCCTATGAGGAACAACTCAGAC
CCCAGCATATACTTCGTCAGACCCAATCGTCGAAAAGGCCAGGGAACCTCGTGAGTCAAGCGCAATGGAAGAAGCCTCCTCCAAATTGCTGGAAAATGAACTCAGACGCC
GCTTGGAACAAGAAAGATAGCAGGGGAGGACTCGGGTGGATAGTGCGTGACTCTAACGGAGCCGTGATCTGTTTCGAAATACATCAAATTGATAAGAAGTGGGCAATCAA
GACATTGGAAGCAAGAGCTATTCTCGAGGGGCTTAATCATATCACTGATACCTGTAACCGGCTCCAAATTCCTCTTCAGATCGAGTCGGATGGCTTAGAAGTGATAAAAG
TCCTCAAAGGAGAAGCTGAAGACCTCTCTGATTTGAAGATTTTCACAGACGACATTTACGCCATCGCCGATAGCTCTGTCTCCATGGAATTCAGCCATTGTAGTCGCCTT
TTGAACACAGACACGCACTGTGTTGCGAAAAGAGCTGCAGTTGTGTCTGCTCCTCAACCGGTTTCTTCGTCGTCTTCTCCGTTTATTTCCGGTAGGATCAACGCCTCTCT
CTCGCGGGAAAAGGAGCGTGCTTTTTTGGGCTCCAAATATCCCTTCTTGGTTTTACCCTTTTATTAA
Protein sequenceShow/hide protein sequence
MWDFGRTPNNPPLEQSLNALPRVYSHPRHNSFPPEYTACPELNNGFPHDYLGSQLLCSVPEDFIRHGYVWGMALIPHNLQLQKTGRSPELGANQYIFDGSCRGTVEPAAR
IANFDQSDQDPLVQKQLGSPGEKVDGYRESSVVRRSNELKKSLRRVEASKWKARAVAKVKGQVSSLVTGLNRGFKPFSKCIFFRNSCSGWKKMTVGDEIVVLSPSRKLSG
LVETKLHPYKFNLQLQKIGRSPELGANQYIFGVFYRLGDSSRTSFSIDPRILVYCDERLVPHPPLIPYEEQLRPQHILRQTQSSKRPGNLVSQAQWKKPPPNCWKMNSDA
AWNKKDSRGGLGWIVRDSNGAVICFEIHQIDKKWAIKTLEARAILEGLNHITDTCNRLQIPLQIESDGLEVIKVLKGEAEDLSDLKIFTDDIYAIADSSVSMEFSHCSRL
LNTDTHCVAKRAAVVSAPQPVSSSSSPFISGRINASLSREKERAFLGSKYPFLVLPFY