; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015502 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015502
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold10:10936404..10938651
RNA-Seq ExpressionSpg015502
SyntenySpg015502
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.5e-0768.18Show/hide
Query:  MRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLP
        MRDCPLIC GESG       L F GQ R+GSWEHN+TRWN LLP
Subjt:  MRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLP

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.6e-0666.67Show/hide
Query:  DCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR
        DCPLI   ESG       L FWGQ RV SWEHNHTRWNSLLP  R
Subjt:  DCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR

KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0448.28Show/hide
Query:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH
        PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Subjt:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-1152.11Show/hide
Query:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR
        PFT  L ++  +   + LG   +++RDCPL C GESG       L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR

TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0448.28Show/hide
Query:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH
        PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Subjt:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.2e-0768.18Show/hide
Query:  MRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLP
        MRDCPLIC GESG       L F GQ R+GSWEHN+TRWN LLP
Subjt:  MRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLP

A0A5A7U202 Reverse transcriptase5.5e-0548.28Show/hide
Query:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH
        PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Subjt:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH

A0A5A7U2P4 Integrase catalytic domain-containing protein7.7e-0766.67Show/hide
Query:  DCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR
        DCPLI   ESG       L FWGQ RV SWEHNHTRWNSLLP  R
Subjt:  DCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR

A0A5D3C3J6 Gag/pol protein3.0e-1152.11Show/hide
Query:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR
        PFT  L ++  +   + LG   +++RDCPL C GESG       L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR

A0A5D3CBX3 Reverse transcriptase5.5e-0548.28Show/hide
Query:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH
        PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Subjt:  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGCAATTCTTCTTTCGTGCGTTTTCGTGTTGGCGTCGAGACGCCGTGGCCGACGTCTCAATTGACAGTGATTTGGGCGGTCCTCTATTTACATAGCGTCGAGAC
GCCGAGAGTGCTTCGCTTTGGTCCTTTCACCGTATTGACATCCCGTGAACTTCAAGATGGATCAAAACAACTGGGTTATGGACTCCTGTTCATGAGGGATTGTCCTTTGA
TTTGTATGGGTGAGAGTGGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTTCTTCCCGACTCTAGGGTTGGAACT
CAAACAGGTTGTTCATTAGAGGAGAACTGGGAACTTAAGGACAAAGATGTAACCCAGGGGTCCATTAGGTCTCATCGGAAAATAGAGGAAAGATGGAAATTGGTCAGAAA
TGCGACCGCATTTCTGGAAAAACAGAGGTCGTTTCGAGTCCTTCGCAGAACTCACTGGGAAGAAGAGGGTGTTGACAGAACCCTAGTAGACGCCCATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGCAATTCTTCTTTCGTGCGTTTTCGTGTTGGCGTCGAGACGCCGTGGCCGACGTCTCAATTGACAGTGATTTGGGCGGTCCTCTATTTACATAGCGTCGAGAC
GCCGAGAGTGCTTCGCTTTGGTCCTTTCACCGTATTGACATCCCGTGAACTTCAAGATGGATCAAAACAACTGGGTTATGGACTCCTGTTCATGAGGGATTGTCCTTTGA
TTTGTATGGGTGAGAGTGGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTTCTTCCCGACTCTAGGGTTGGAACT
CAAACAGGTTGTTCATTAGAGGAGAACTGGGAACTTAAGGACAAAGATGTAACCCAGGGGTCCATTAGGTCTCATCGGAAAATAGAGGAAAGATGGAAATTGGTCAGAAA
TGCGACCGCATTTCTGGAAAAACAGAGGTCGTTTCGAGTCCTTCGCAGAACTCACTGGGAAGAAGAGGGTGTTGACAGAACCCTAGTAGACGCCCATGAGTAG
Protein sequenceShow/hide protein sequence
MLGNSSFVRFRVGVETPWPTSQLTVIWAVLYLHSVETPRVLRFGPFTVLTSRELQDGSKQLGYGLLFMRDCPLICMGESGLPFWGQYRVGSWEHNHTRWNSLLPDSRVGT
QTGCSLEENWELKDKDVTQGSIRSHRKIEERWKLVRNATAFLEKQRSFRVLRRTHWEEEGVDRTLVDAHE