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Spg015512 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015512
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:13786100..13794434
RNA-Seq ExpressionSpg015512
SyntenySpg015512
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-1178.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-0271.05Show/hide
Query:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS
        PL TL+V  DNDAVVEIELPV D LPTSAES  ++SS+
Subjt:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS

KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-1178.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1178.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1178.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-0271.05Show/hide
Query:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS
        PL TL+V  DNDAVVEIELPV D LPTSAES  ++SS+
Subjt:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-1171.43Show/hide
Query:  REKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        +EKSAVE SRG  TASGFRGREQR+FTPG+N+  RQDFK RSGGQ SR +S GS +
Subjt:  REKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

TrEMBL top hitse value%identityAlignment
A0A5A7SZ16 Reverse transcriptase1.0e-1171.43Show/hide
Query:  REKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        +EKSAVE SRG  TASGFRGREQR+FTPG+N+  RQDFK RSGGQ SR +S GS +
Subjt:  REKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

A0A5A7T6M8 DNA/RNA polymerases superfamily protein2.6e-0271.05Show/hide
Query:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS
        PL TL+V  DNDAVVEIELPV D LPTSAES  ++SS+
Subjt:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS

A0A5A7T6M8 DNA/RNA polymerases superfamily protein8.0e-1278.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

A0A5D3BTP3 Reverse transcriptase8.0e-1278.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

A0A5D3C867 DNA/RNA polymerases superfamily protein8.0e-1278.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

A0A5D3C867 DNA/RNA polymerases superfamily protein2.6e-0271.05Show/hide
Query:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS
        PL TL+V  DNDAVVEIELPV D LPTSAES  ++SS+
Subjt:  PLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSS

A0A5D3C867 DNA/RNA polymerases superfamily protein8.0e-1278.18Show/hide
Query:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY
        EKSA+E SRG  T SG RGREQR+FTPGVNV G QDFKRRSGG+  RQMSSGSAY
Subjt:  EKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKRRSGGQLSRQMSSGSAY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCAACAGGCTACCGTTAGGAAAAGACAACTGTTGGTGACTGACCTAAGTGACCCTATCCATTCCTGGAGTTCGCGGCGTTCCGAATCCTATGATCAGGTCCTCCA
AAGAGATGGTCGCTTCCAGGGTGACGAGCAGGCGGATCATAGGAATCTCACTGTGCAACCTAGGGACGTCATTGGGGTCCATGCCTGGCAGGAAAAGGAAATAGCTGAAG
CAAAGGCAACCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAACCAG
GAGGATCTCTTGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAACCTCTATTTGGTTATATTCCGTTGTTGACGTTGACTGTACTCCGTGACAA
CGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGGAAAAGT
CGGCAGTGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTCCGAGGTCGTGAGCAGCGGAAGTTCACACCTGGAGTGAATGTTTTAGGCCGTCAAGACTTCAAGCGT
CGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGGTAGTGCTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACCAACAGGCTACCGTTAGGAAAAGACAACTGTTGGTGACTGACCTAAGTGACCCTATCCATTCCTGGAGTTCGCGGCGTTCCGAATCCTATGATCAGGTCCTCCA
AAGAGATGGTCGCTTCCAGGGTGACGAGCAGGCGGATCATAGGAATCTCACTGTGCAACCTAGGGACGTCATTGGGGTCCATGCCTGGCAGGAAAAGGAAATAGCTGAAG
CAAAGGCAACCATAGCAGAAGCTGAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAACCAG
GAGGATCTCTTGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAACCTCTATTTGGTTATATTCCGTTGTTGACGTTGACTGTACTCCGTGACAA
CGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGGAAAAGT
CGGCAGTGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTCCGAGGTCGTGAGCAGCGGAAGTTCACACCTGGAGTGAATGTTTTAGGCCGTCAAGACTTCAAGCGT
CGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGGTAGTGCTTATTAG
Protein sequenceShow/hide protein sequence
MHQQATVRKRQLLVTDLSDPIHSWSSRRSESYDQVLQRDGRFQGDEQADHRNLTVQPRDVIGVHAWQEKEIAEAKATIAEAEFNLSTSGFCFGLSYTEGTKRAQDFRANQ
EDLLFSLVFRAFWGVQVESEPLFGYIPLLTLTVLRDNDAVVEIELPVPDTLPTSAESSRTSSSSTFQEGQREKSAVEPSRGAPTASGFRGREQRKFTPGVNVLGRQDFKR
RSGGQLSRQMSSGSAY