; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015517 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015517
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold10:10774270..10782657
RNA-Seq ExpressionSpg015517
SyntenySpg015517
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]3.2e-1549.61Show/hide
Query:  TVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY
        TVN WF            V   +   E    PRGNR SLQTG+LDKTVEIELP+PDTLPT AESF S+SSTWLELY ES            VMSGLH VY
Subjt:  TVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY

Query:  V----ERSLD-------LVAFGLRQRLQR
        V    + SL+         +FG+RQ++ R
Subjt:  V----ERSLD-------LVAFGLRQRLQR

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.9e-2849.48Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNR
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF            V   +   E    PRGNR
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNR

Query:  SSLQTGELDKT----------------------------VEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY
         SLQTG+LDKT                            VEIELP+PDTLPT AESF S+SSTWLELY ES            VMSGLH V+
Subjt:  SSLQTGELDKT----------------------------VEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.2e-1458.16Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVYV----ERSLD-------LVAFGLRQRLQR
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAES  S+SSTWLELY ES            VMSGLH +YV    + SL+         +FGLRQ++ R
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVYV----ERSLD-------LVAFGLRQRLQR

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.9e-2041.75Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRV--FEKEEFDV
        TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ++   +   +  ++DV
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRV--FEKEEFDV

Query:  -PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVMSGLHHVYVERSLDLVAFGLRQRLQRRDAVTIA
         PRGNRSSLQTGELDKT                 VEIELPVPD LPTSA+S  S+S     +    ++ G    ++  S     FGLRQ++ R   +  +
Subjt:  -PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVMSGLHHVYVERSLDLVAFGLRQRLQRRDAVTIA

Query:  SQRSRF
          +S +
Subjt:  SQRSRF

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]7.6e-2541.33Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNL----WFCFR-----FELHRRNQEV--SCRVFEKEEFDV-P
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +     +  F       E+ + NQ++       +  ++DV P
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNL----WFCFR-----FELHRRNQEV--SCRVFEKEEFDV-P

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESFRSSSSTWLELYIE
        VPDTLPTSAES  S+SSTWLE   E
Subjt:  VPDTLPTSAESFRSSSSTWLELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.5e-1549.61Show/hide
Query:  TVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY
        TVN WF            V   +   E    PRGNR SLQTG+LDKTVEIELP+PDTLPT AESF S+SSTWLELY ES            VMSGLH VY
Subjt:  TVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY

Query:  V----ERSLD-------LVAFGLRQRLQR
        V    + SL+         +FG+RQ++ R
Subjt:  V----ERSLD-------LVAFGLRQRLQR

A0A5A7UGD0 Uncharacterized protein9.3e-2949.48Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNR
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF            V   +   E    PRGNR
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNR

Query:  SSLQTGELDKT----------------------------VEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY
         SLQTG+LDKT                            VEIELP+PDTLPT AESF S+SSTWLELY ES            VMSGLH V+
Subjt:  SSLQTGELDKT----------------------------VEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVY

A0A5D3BET3 Uncharacterized protein5.9e-1558.16Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVYV----ERSLD-------LVAFGLRQRLQR
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAES  S+SSTWLELY ES            VMSGLH +YV    + SL+         +FGLRQ++ R
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIES------------VMSGLHHVYV----ERSLD-------LVAFGLRQRLQR

A0A5D3BZ50 Pentatricopeptide repeat-containing protein9.4e-2141.75Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRV--FEKEEFDV
        TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ++   +   +  ++DV
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRV--FEKEEFDV

Query:  -PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVMSGLHHVYVERSLDLVAFGLRQRLQRRDAVTIA
         PRGNRSSLQTGELDKT                 VEIELPVPD LPTSA+S  S+S     +    ++ G    ++  S     FGLRQ++ R   +  +
Subjt:  -PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVMSGLHHVYVERSLDLVAFGLRQRLQRRDAVTIA

Query:  SQRSRF
          +S +
Subjt:  SQRSRF

A0A5D3CAC6 Uncharacterized protein3.7e-2541.33Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNL----WFCFR-----FELHRRNQEV--SCRVFEKEEFDV-P
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +     +  F       E+ + NQ++       +  ++DV P
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNL----WFCFR-----FELHRRNQEV--SCRVFEKEEFDV-P

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESFRSSSSTWLELYIE
        VPDTLPTSAES  S+SSTWLE   E
Subjt:  VPDTLPTSAESFRSSSSTWLELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCGTTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
GTTTTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAAGGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAA
CTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGT
TATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTCTTTGGATCTTGTGGCTTTTGGCTTGCGGCAAAGGTTACAGCGTCGAGACGCTGTGACTATAGCGTCTCAACGCT
CTCGATTTTTCCTTAAACAGAATGGGCGACAATCGGACAGTCCATTAGGTCCCATCGATAGCTCATTTAGGGCGTTGAGAATCCCTTTTCTCCCTAGAGATTTTCTTTCT
CCCACAAGAAACCTCACAAAGGCCTCTGTAGTCATACTGGTGAAATCTTGTGGTTGGTGTCATAGTGGTGAATTTTCCATCAAGTTAGAGGATCAAGGGGCTGCTGAAAA
TCAGAGAAGAAAACTTGGAGAATTTGGTGAAATTCGGTCAAGACTTAAACGGCGGTGCGCACAGTCCTGCGACGTCAGCGGTTCGGTCCGTGAAGAGGCGCGGTTCGCGT
CTGGTTCCTCCGATTCGTTGACTATATCGCTGGTTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCGTTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
GTTTTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAAGGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAA
CTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGT
TATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTCTTTGGATCTTGTGGCTTTTGGCTTGCGGCAAAGGTTACAGCGTCGAGACGCTGTGACTATAGCGTCTCAACGCT
CTCGATTTTTCCTTAAACAGAATGGGCGACAATCGGACAGTCCATTAGGTCCCATCGATAGCTCATTTAGGGCGTTGAGAATCCCTTTTCTCCCTAGAGATTTTCTTTCT
CCCACAAGAAACCTCACAAAGGCCTCTGTAGTCATACTGGTGAAATCTTGTGGTTGGTGTCATAGTGGTGAATTTTCCATCAAGTTAGAGGATCAAGGGGCTGCTGAAAA
TCAGAGAAGAAAACTTGGAGAATTTGGTGAAATTCGGTCAAGACTTAAACGGCGGTGCGCACAGTCCTGCGACGTCAGCGGTTCGGTCCGTGAAGAGGCGCGGTTCGCGT
CTGGTTCCTCCGATTCGTTGACTATATCGCTGGTTCATTGA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFCFRFELHRRNQEVSCRVFEKEEFDVPRGNRSSLQTGE
LDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESVMSGLHHVYVERSLDLVAFGLRQRLQRRDAVTIASQRSRFFLKQNGRQSDSPLGPIDSSFRALRIPFLPRDFLS
PTRNLTKASVVILVKSCGWCHSGEFSIKLEDQGAAENQRRKLGEFGEIRSRLKRRCAQSCDVSGSVREEARFASGSSDSLTISLVH