; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015541 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015541
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptiontRNA-specific adenosine deaminase 1 isoform X1
Genome locationscaffold10:13586998..13595123
RNA-Seq ExpressionSpg015541
SyntenySpg015541
Gene Ontology termsGO:0006382 - adenosine to inosine editing (biological process)
GO:0006396 - RNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003725 - double-stranded RNA binding (molecular function)
GO:0003726 - double-stranded RNA adenosine deaminase activity (molecular function)
GO:0008251 - tRNA-specific adenosine deaminase activity (molecular function)
InterPro domainsIPR002466 - Adenosine deaminase/editase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575167.1 tRNA-specific adenosine deaminase TAD1, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2077.78Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y +LPKKGKPQGR+VTVLA FLVSSPS QDLEVVALG G KCL   QLSSNGD+VND HA+II RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

KAG7013726.1 tRNA-specific adenosine deaminase 1 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-2172.5Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSINSSFSC
        +Y +LPKKGKPQGR+VTVLA FLVSSPS QDLEVVALG G KCL   QLSSNGD+VND HA+II RRAL RF +   F C
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSINSSFSC

XP_011656334.1 tRNA-specific adenosine deaminase TAD1 isoform X2 [Cucumis sativus]1.4e-2075Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y TLPKKGKPQGR+VTVLA FL+SSPS QDLEVVALG G KCL   QLSSNGD+VND HA+++ RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

XP_022959067.1 tRNA-specific adenosine deaminase 1 isoform X1 [Cucurbita moschata]1.1e-2077.78Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y +LPKKGKPQGR+VTVLA FLVSSPS QDLEVVALG G KCL   QLSSNGD+VND HA+II RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

XP_022959069.1 tRNA-specific adenosine deaminase 1 isoform X2 [Cucurbita moschata]1.1e-2077.78Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y +LPKKGKPQGR+VTVLA FLVSSPS QDLEVVALG G KCL   QLSSNGD+VND HA+II RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

TrEMBL top hitse value%identityAlignment
A0A0A0KCY7 A to I editase domain-containing protein6.8e-2175Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y TLPKKGKPQGR+VTVLA FL+SSPS QDLEVVALG G KCL   QLSSNGD+VND HA+++ RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

A0A1S4E240 tRNA-specific adenosine deaminase 1 isoform X31.5e-2076.39Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y TLPKKGKPQGR+VTVLA FL+SSPS QDLEVVALG G KCL   QLSSNGD+VND HA+ I RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

A0A5D3BVY3 tRNA-specific adenosine deaminase 1 isoform X41.5e-2076.39Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y TLPKKGKPQGR+VTVLA FL+SSPS QDLEVVALG G KCL   QLSSNGD+VND HA+ I RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

A0A6J1H3J2 tRNA-specific adenosine deaminase 1 isoform X15.2e-2177.78Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y +LPKKGKPQGR+VTVLA FLVSSPS QDLEVVALG G KCL   QLSSNGD+VND HA+II RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

A0A6J1H6X3 tRNA-specific adenosine deaminase 1 isoform X25.2e-2177.78Show/hide
Query:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        +Y +LPKKGKPQGR+VTVLA FLVSSPS QDLEVVALG G KCL   QLSSNGD+VND HA+II RRAL RF
Subjt:  IYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

SwissProt top hitse value%identityAlignment
F4HU58 tRNA-specific adenosine deaminase TAD15.2e-1867.61Show/hide
Query:  YYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        Y +LPKKGKPQGR+VTVL+ FLVSSPS QD +V+ALG G KC+S   LS  GDIVND HA+++ RRAL RF
Subjt:  YYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

Q4R7N3 tRNA-specific adenosine deaminase 13.1e-0738.1Show/hide
Query:  LPKKGKPQ-GRKVTVLATFL-VSSPSTQDL-----------EVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSIN
        LPKKGKP+   + T+LA  + + SP+ QD            EVV++G G KC+   ++  +GDI+ND HA++I RR  +R+ ++
Subjt:  LPKKGKPQ-GRKVTVLATFL-VSSPSTQDL-----------EVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSIN

Q54XP3 tRNA-specific adenosine deaminase 14.8e-0841.77Show/hide
Query:  FIYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLE---VVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSIN
        F    L KKGKP   + TVLAT ++   +T   E   V++LG G +CL    LS+ GD++ND HA+II +R+ ++F  N
Subjt:  FIYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLE---VVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSIN

Q9BUB4 tRNA-specific adenosine deaminase 19.1e-0736.9Show/hide
Query:  LPKKGKPQ-GRKVTVLATFL-VSSPSTQ-----------DLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSIN
        LPKKGKP+   + T+LA  + + SP+ +             EVV++G G KC+   ++  NGDI+ND HA++I RR+ +R+ ++
Subjt:  LPKKGKPQ-GRKVTVLATFL-VSSPSTQ-----------DLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSIN

Q9V3R6 tRNA-specific adenosine deaminase 14.8e-0839.44Show/hide
Query:  YYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        + +LPK GKP   + T+LA  +  + +T+  ++V+LG G KC+   +L  NG I+ND HA+++ RR   RF
Subjt:  YYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF

Arabidopsis top hitse value%identityAlignment
AT1G01760.1 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases3.7e-1967.61Show/hide
Query:  YYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF
        Y +LPKKGKPQGR+VTVL+ FLVSSPS QD +V+ALG G KC+S   LS  GDIVND HA+++ RRAL RF
Subjt:  YYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGACACTTTCATTTACTACACTCTCCCAAAGAAAGGCAAGCCCCAGGGTCGCAAAGTCACTGTCTTGGCTACGTTTCTCGTTTCATCTCCTTCAACACAAGATTTGGA
AGTTGTGGCGTTAGGAATAGGGATGAAGTGTCTCAGTCCCTTGCAGTTAAGCTCAAATGGTGACATCGTGAATGATTTGCACGCAAAAATAATCACTCGGAGAGCTTTAA
AGAGATTTTCTATAAATTCATCCTTTTCTTGCATGGCCAAGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCATGG
CCAAGGAGAGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTTGTTGGATTCATTTGTGGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTC
CATAGGTTGTCTAGTGAGTCATGTGGCCGATGATTCATTGACACCCATTCATGAGCTTAGTTCTTTCGATCTTGCTAAGGATGAGCAGTTAGGGGTGAGTTGTATGAATA
GTGGGGAAGAATTGGAGAGTTGTAGCACCTATCAAGAACATGTTTGTGAGGAAGAAAAAGAAAATGAGCTTGTAGTGTCAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTT
GAAAAGCCTTCGTCTGTTTTATCTTCTCCATCCTTTGTAGATTTTGATTGTTCTTCTTTCTATTCTCACAAATTTTCTATAAATTCATCCTTTTCTTGCACGGCCAAGGG
GAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACG
GAGACGTTGTTGGATTGATTTGTGGTAGGGATGCTTCATCTTCAACTTCCAGAGAAATCCGACCTAGGACAGAGGATGCACCACCATGTTTGATTGATAAAGTTGGAGTT
GAAGGTGTGTCATGTGGTAGACGTAGAACCATAACAGCAGAGTCATTTCGTTCTCTAGCTTCTATCTCCGATGTCGGGTCTCCTGCAGGAAGGGCGGCGGAGACATCTTC
TCTTTCGGCGGTGCAACGACGACACGGTGGCAGTGCGGCGGCGGTTCGAGAATCTGATCAGCAGCAGAGAGCGTTTGCGGATCTGGCCTTCGTCGTGTGTCTTCTCCGAC
AGTGCGTGCGGCGGCGTGTCGGCGAGGTTGTAGCAGCAAGTTCGGTCGGTCTCTCTGCGTGTTTTCTCGACGAGTCTCTCAGCTGTTGGGCGTTTTCTGGCAGCAGCAGC
TTCTCCGACGAGCGGCGACGCGATTTGCAATGTTTTGGGTCTTTTTCGGGGTTTCCGGCGAGATTGAGTAGTGGGTCTTTTAGTTCCTTTGATTTCCAACAATTTCGGTA
CAAGGTAAAGGCAAGGGCAGGTGCAAGGCGACTGATGAGAATTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATTGACACTTTCATTTACTACACTCTCCCAAAGAAAGGCAAGCCCCAGGGTCGCAAAGTCACTGTCTTGGCTACGTTTCTCGTTTCATCTCCTTCAACACAAGATTTGGA
AGTTGTGGCGTTAGGAATAGGGATGAAGTGTCTCAGTCCCTTGCAGTTAAGCTCAAATGGTGACATCGTGAATGATTTGCACGCAAAAATAATCACTCGGAGAGCTTTAA
AGAGATTTTCTATAAATTCATCCTTTTCTTGCATGGCCAAGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCATGG
CCAAGGAGAGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTTGTTGGATTCATTTGTGGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTC
CATAGGTTGTCTAGTGAGTCATGTGGCCGATGATTCATTGACACCCATTCATGAGCTTAGTTCTTTCGATCTTGCTAAGGATGAGCAGTTAGGGGTGAGTTGTATGAATA
GTGGGGAAGAATTGGAGAGTTGTAGCACCTATCAAGAACATGTTTGTGAGGAAGAAAAAGAAAATGAGCTTGTAGTGTCAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTT
GAAAAGCCTTCGTCTGTTTTATCTTCTCCATCCTTTGTAGATTTTGATTGTTCTTCTTTCTATTCTCACAAATTTTCTATAAATTCATCCTTTTCTTGCACGGCCAAGGG
GAGTCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACG
GAGACGTTGTTGGATTGATTTGTGGTAGGGATGCTTCATCTTCAACTTCCAGAGAAATCCGACCTAGGACAGAGGATGCACCACCATGTTTGATTGATAAAGTTGGAGTT
GAAGGTGTGTCATGTGGTAGACGTAGAACCATAACAGCAGAGTCATTTCGTTCTCTAGCTTCTATCTCCGATGTCGGGTCTCCTGCAGGAAGGGCGGCGGAGACATCTTC
TCTTTCGGCGGTGCAACGACGACACGGTGGCAGTGCGGCGGCGGTTCGAGAATCTGATCAGCAGCAGAGAGCGTTTGCGGATCTGGCCTTCGTCGTGTGTCTTCTCCGAC
AGTGCGTGCGGCGGCGTGTCGGCGAGGTTGTAGCAGCAAGTTCGGTCGGTCTCTCTGCGTGTTTTCTCGACGAGTCTCTCAGCTGTTGGGCGTTTTCTGGCAGCAGCAGC
TTCTCCGACGAGCGGCGACGCGATTTGCAATGTTTTGGGTCTTTTTCGGGGTTTCCGGCGAGATTGAGTAGTGGGTCTTTTAGTTCCTTTGATTTCCAACAATTTCGGTA
CAAGGTAAAGGCAAGGGCAGGTGCAAGGCGACTGATGAGAATTCGTTAG
Protein sequenceShow/hide protein sequence
IDTFIYYTLPKKGKPQGRKVTVLATFLVSSPSTQDLEVVALGIGMKCLSPLQLSSNGDIVNDLHAKIITRRALKRFSINSSFSCMAKGSPIGEILALISTRDLLWELKAW
PRRGNQARRRGDRDGDVVGFICGLQTPKEVSEVGSTSIGCLVSHVADDSLTPIHELSSFDLAKDEQLGVSCMNSGEELESCSTYQEHVCEEEKENELVVSEEVQEVEFEV
EKPSSVLSSPSFVDFDCSSFYSHKFSINSSFSCTAKGSPIGEILALISTRDLLWELKARPRSGNQARRRGDRDGDVVGLICGRDASSSTSREIRPRTEDAPPCLIDKVGV
EGVSCGRRRTITAESFRSLASISDVGSPAGRAAETSSLSAVQRRHGGSAAAVRESDQQQRAFADLAFVVCLLRQCVRRRVGEVVAASSVGLSACFLDESLSCWAFSGSSS
FSDERRRDLQCFGSFSGFPARLSSGSFSSFDFQQFRYKVKARAGARRLMRIR