; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015549 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015549
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:11072754..11074176
RNA-Seq ExpressionSpg015549
SyntenySpg015549
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]6.2e-1283.33Show/hide
Query:  VHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        V+TGY+ LLTL+VLRDND +V AGRVPLRQRQWECWASPTTS
Subjt:  VHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0856.92Show/hide
Query:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        PRGNR SLQT ++ K          T   PL TLSVL DND VV AG+ PLRQR+WEC   PTTS
Subjt:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

KAA0037923.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-0856.72Show/hide
Query:  VFCVRGISGQIGWESRFQFFRPRGNRPSLQTRKLAK---IPEAIWYPVHTGYIPLLTLSVLRDNDDV
        V   RGIS    WE     FR R  +PS QT+ LA+    PEAIWY VH G+IPLLTLSVLR+ND V
Subjt:  VFCVRGISGQIGWESRFQFFRPRGNRPSLQTRKLAK---IPEAIWYPVHTGYIPLLTLSVLRDNDDV

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.1e-0857.58Show/hide
Query:  RPRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        + RGNRPSLQT +L K          T    L TLSVLR+ND  V AGRVPLRQR+WEC   PTTS
Subjt:  RPRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0856.92Show/hide
Query:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        PRGNR SLQT ++ K          T   PL TLSVL DND VV AG+ PLRQR+WEC   PTTS
Subjt:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein3.0e-1283.33Show/hide
Query:  VHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        V+TGY+ LLTL+VLRDND +V AGRVPLRQRQWECWASPTTS
Subjt:  VHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

A0A5A7T4K8 Reverse transcriptase5.3e-0956.72Show/hide
Query:  VFCVRGISGQIGWESRFQFFRPRGNRPSLQTRKLAK---IPEAIWYPVHTGYIPLLTLSVLRDNDDV
        V   RGIS    WE     FR R  +PS QT+ LA+    PEAIWY VH G+IPLLTLSVLR+ND V
Subjt:  VFCVRGISGQIGWESRFQFFRPRGNRPSLQTRKLAK---IPEAIWYPVHTGYIPLLTLSVLRDNDDV

A0A5A7T7M6 Reverse transcriptase6.9e-0956.92Show/hide
Query:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        PRGNR SLQT ++ K          T   PL TLSVL DND VV AG+ PLRQR+WEC   PTTS
Subjt:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

A0A5A7TDY3 Uncharacterized protein5.3e-0957.58Show/hide
Query:  RPRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        + RGNRPSLQT +L K          T    L TLSVLR+ND  V AGRVPLRQR+WEC   PTTS
Subjt:  RPRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

A0A5D3BTP3 Reverse transcriptase6.9e-0956.92Show/hide
Query:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS
        PRGNR SLQT ++ K          T   PL TLSVL DND VV AG+ PLRQR+WEC   PTTS
Subjt:  PRGNRPSLQTRKLAKIPEAIWYPVHTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTAGGTTCAATCTTTCTATCTCTGGTTTTTTACTCGGTTTGAGCTACACAGAGAGAGCTAAGAGAGCACAGAAGTTTCGTGCAAACAAGGAGGATCTCTG
GTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGAGGGTAGCAGTGAAGCACGAATCTGTGTTTTTTGTGTTCGGGGCATTTCTG
GACAAATCGGTTGGGAATCGCGTTTTCAATTCTTCAGGCCAAGAGGAAATAGGCCAAGTTTACAGACCAGGAAACTAGCTAAGATACCCGAGGCTATATGGTACCCTGTG
CACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGATGTCGTGGGTGCTGGGCGGGTCCCACTACGACAAAGACAATGGGAGTGCTGGGCGAG
CCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTAGGTTCAATCTTTCTATCTCTGGTTTTTTACTCGGTTTGAGCTACACAGAGAGAGCTAAGAGAGCACAGAAGTTTCGTGCAAACAAGGAGGATCTCTG
GTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGAGGGTAGCAGTGAAGCACGAATCTGTGTTTTTTGTGTTCGGGGCATTTCTG
GACAAATCGGTTGGGAATCGCGTTTTCAATTCTTCAGGCCAAGAGGAAATAGGCCAAGTTTACAGACCAGGAAACTAGCTAAGATACCCGAGGCTATATGGTACCCTGTG
CACACAGGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGATGTCGTGGGTGCTGGGCGGGTCCCACTACGACAAAGACAATGGGAGTGCTGGGCGAG
CCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MAESRFNLSISGFLLGLSYTERAKRAQKFRANKEDLWFSLVFRAFWGVQVESEALFEGSSEARICVFCVRGISGQIGWESRFQFFRPRGNRPSLQTRKLAKIPEAIWYPV
HTGYIPLLTLSVLRDNDDVVGAGRVPLRQRQWECWASPTTS