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Spg015561 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015561
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:14496484..14501849
RNA-Seq ExpressionSpg015561
SyntenySpg015561
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-1952.38Show/hide
Query:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCSTFQEGQRVS
        EMPRGNR SLQTGELDKT                 VEIELPV D LPTSAES  S+S+TW+ELY  SV+  + V L  +PS VRA   VC    EG    
Subjt:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCSTFQEGQRVS

Query:  LEEDNVRWLHAIFRTKLAGGLGGGVT
        +  D+V WLHA+F+ K  GG  GGVT
Subjt:  LEEDNVRWLHAIFRTKLAGGLGGGVT

KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2153.97Show/hide
Query:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS
        +E PRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    
Subjt:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS

Query:  LEEDNVRWLHAIFRTKLAGGLGGGVT
        +  D+V WLHAIFR K AGG GGGVT
Subjt:  LEEDNVRWLHAIFRTKLAGGLGGGVT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.2e-2150.78Show/hide
Query:  GDAAHAKRKGGPCMREGKGKEEMPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQ
        G++     K G  +        +PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV+    +L  +PS VR    VC    EG 
Subjt:  GDAAHAKRKGGPCMREGKGKEEMPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQ

Query:  RVSLEEDNVRWLHAIFRTKLAGGLGGGV
           +  D++ WLHA+F  K AG  GGGV
Subjt:  RVSLEEDNVRWLHAIFRTKLAGGLGGGV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]6.8e-2356Show/hide
Query:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSL
        EMPRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+S+TW+ELY E V+    +L  +PS VRA   VC    EG    +
Subjt:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSL

Query:  EEDNVRWLHAIFRTKLAGGLGGGVT
          D+V WLH +FR K+AGG GGGVT
Subjt:  EEDNVRWLHAIFRTKLAGGLGGGVT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-2153.97Show/hide
Query:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS
        +E PRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    
Subjt:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS

Query:  LEEDNVRWLHAIFRTKLAGGLGGGVT
        +  D+V WLHAIFR K AGG GGGVT
Subjt:  LEEDNVRWLHAIFRTKLAGGLGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.1e-2153.97Show/hide
Query:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS
        +E PRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    
Subjt:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS

Query:  LEEDNVRWLHAIFRTKLAGGLGGGVT
        +  D+V WLHAIFR K AGG GGGVT
Subjt:  LEEDNVRWLHAIFRTKLAGGLGGGVT

A0A5A7UAH6 CCHC-type domain-containing protein1.1e-2150.78Show/hide
Query:  GDAAHAKRKGGPCMREGKGKEEMPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQ
        G++     K G  +        +PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV+    +L  +PS VR    VC    EG 
Subjt:  GDAAHAKRKGGPCMREGKGKEEMPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQ

Query:  RVSLEEDNVRWLHAIFRTKLAGGLGGGV
           +  D++ WLHA+F  K AG  GGGV
Subjt:  RVSLEEDNVRWLHAIFRTKLAGGLGGGV

A0A5A7VIY9 Uncharacterized protein3.3e-2356Show/hide
Query:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSL
        EMPRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+S+TW+ELY E V+    +L  +PS VRA   VC    EG    +
Subjt:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSL

Query:  EEDNVRWLHAIFRTKLAGGLGGGVT
          D+V WLH +FR K+AGG GGGVT
Subjt:  EEDNVRWLHAIFRTKLAGGLGGGVT

A0A5D3C867 DNA/RNA polymerases superfamily protein2.2e-1952.38Show/hide
Query:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCSTFQEGQRVS
        EMPRGNR SLQTGELDKT                 VEIELPV D LPTSAES  S+S+TW+ELY  SV+  + V L  +PS VRA   VC    EG    
Subjt:  EMPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-VNVLLLSEPSYVRATPRVCSTFQEGQRVS

Query:  LEEDNVRWLHAIFRTKLAGGLGGGVT
        +  D+V WLHA+F+ K  GG  GGVT
Subjt:  LEEDNVRWLHAIFRTKLAGGLGGGVT

A0A5D3DR18 Gag/pol protein1.1e-2153.97Show/hide
Query:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS
        +E PRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    
Subjt:  EEMPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVS

Query:  LEEDNVRWLHAIFRTKLAGGLGGGVT
        +  D+V WLHAIFR K AGG GGGVT
Subjt:  LEEDNVRWLHAIFRTKLAGGLGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAGAACACAAAGAGAAAACGGAGATGGAAGCTTTCAGGCGACACGAGGGAACAGGAAATCGTGGGAGGGAGGGAGGTTGGCGATGCTGCACACGCAAAACGTAA
GGGGGGGCCATGCATGCGAGAAGGAAAGGGAAAGGAAGAGATGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGG
TGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTATCCGAA
CCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACAATGTTCGTTGGCTTCACGCCATCTTCCGGACTAA
GCTAGCAGGTGGTCTGGGAGGGGGTGTGACAATGAAGAACTTGGAGAACTTGTCGATGGATGACTCATGCATACACACAACATGCTATGCAACCCCACATGGATTCCGCA
CCATGCTCGCATTCTTAGCACATGATTTACGCGTCATGCCACACACCAATACACATGAATTTCGCGCCATGCAACGCAACTTAACACGTGATTTCCGAGTCACGCTCCGC
ACCAAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAAGAACACAAAGAGAAAACGGAGATGGAAGCTTTCAGGCGACACGAGGGAACAGGAAATCGTGGGAGGGAGGGAGGTTGGCGATGCTGCACACGCAAAACGTAA
GGGGGGGCCATGCATGCGAGAAGGAAAGGGAAAGGAAGAGATGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGG
TGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTATCCGAA
CCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACAATGTTCGTTGGCTTCACGCCATCTTCCGGACTAA
GCTAGCAGGTGGTCTGGGAGGGGGTGTGACAATGAAGAACTTGGAGAACTTGTCGATGGATGACTCATGCATACACACAACATGCTATGCAACCCCACATGGATTCCGCA
CCATGCTCGCATTCTTAGCACATGATTTACGCGTCATGCCACACACCAATACACATGAATTTCGCGCCATGCAACGCAACTTAACACGTGATTTCCGAGTCACGCTCCGC
ACCAAAACATGA
Protein sequenceShow/hide protein sequence
MPKNTKRKRRWKLSGDTREQEIVGGREVGDAAHAKRKGGPCMREGKGKEEMPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSE
PSYVRATPRVCSTFQEGQRVSLEEDNVRWLHAIFRTKLAGGLGGGVTMKNLENLSMDDSCIHTTCYATPHGFRTMLAFLAHDLRVMPHTNTHEFRAMQRNLTRDFRVTLR
TKT