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Spg015576 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015576
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold10:16090486..16099665
RNA-Seq ExpressionSpg015576
SyntenySpg015576
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-2281.58Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.5e-2280Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    F++SV STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.8e-2337.79Show/hide
Query:  EHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE--------HSGVYKLTP------------------
        EHF+ERVKEE E+EFRGLRLKKIGKSSCKA+HCRI       +P     FS      E+ + NQ+         SG + + P                  
Subjt:  EHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE--------HSGVYKLTP------------------

Query:  ----------KLYLVSC----------RVFENED---------------------FDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS-
                  +LY   C           V  + D                     + V  +N G   R L  ++  +EIEL VPDTLPTSAESS S+SS 
Subjt:  ----------KLYLVSC----------RVFENED---------------------FDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS-

Query:  ---------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                 Y P+ V +        R    V S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  ---------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]8.7e-2348.1Show/hide
Query:  VYKLTPKLYLVSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V+K   KLYLVSCRV ENEDF VYFIN G VLRKLWVLEVR                                          VEIELPVPDTLPT    
Subjt:  VYKLTPKLYLVSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
              Y P+ V +  +  +        GS GIVRGDDVCWLHAV RAK+AGGPGGGV
Subjt:  SRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.8e-2152.52Show/hide
Query:  VYKLTPKLYL------VSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY
        ++KL  KLYL      +S +  E +   ++ ++  SVLR     +    IELPVPDTLPTSAESS S+SS                 F NQVMS LH V 
Subjt:  VYKLTPKLYL------VSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY

Query:  VERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
           F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.6e-2281.58Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    F+VSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3BMJ4 Retrotrans_gag domain-containing protein7.2e-2380Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    F++SV STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3CAC6 Uncharacterized protein8.5e-2437.79Show/hide
Query:  EHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE--------HSGVYKLTP------------------
        EHF+ERVKEE E+EFRGLRLKKIGKSSCKA+HCRI       +P     FS      E+ + NQ+         SG + + P                  
Subjt:  EHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE--------HSGVYKLTP------------------

Query:  ----------KLYLVSC----------RVFENED---------------------FDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS-
                  +LY   C           V  + D                     + V  +N G   R L  ++  +EIEL VPDTLPTSAESS S+SS 
Subjt:  ----------KLYLVSC----------RVFENED---------------------FDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS-

Query:  ---------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                 Y P+ V +        R    V S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  ---------YFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJL4 Retrotrans_gag domain-containing protein4.2e-2348.1Show/hide
Query:  VYKLTPKLYLVSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V+K   KLYLVSCRV ENEDF VYFIN G VLRKLWVLEVR                                          VEIELPVPDTLPT    
Subjt:  VYKLTPKLYLVSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
              Y P+ V +  +  +        GS GIVRGDDVCWLHAV RAK+AGGPGGGV
Subjt:  SRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3CJX3 CCHC-type domain-containing protein1.4e-2152.52Show/hide
Query:  VYKLTPKLYL------VSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY
        ++KL  KLYL      +S +  E +   ++ ++  SVLR     +    IELPVPDTLPTSAESS S+SS                 F NQVMS LH V 
Subjt:  VYKLTPKLYL------VSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY

Query:  VERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
           F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGGTGGTCCGGGAAGGGAGCACTTTAAGGAGAGAGTGAAGGAAGAAGGAGAAGATGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAG
CCAGCCATTGCAGAATCTGCGTTCAACCTGGCAACCTCTGGTTTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGACTCCGAAG
CTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTGTGGGTGTTGGAAGTTAGGGTAGAGAT
CGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAA
GGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCATGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACA
TAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGGTGGTCCGGGAAGGGAGCACTTTAAGGAGAGAGTGAAGGAAGAAGGAGAAGATGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAG
CCAGCCATTGCAGAATCTGCGTTCAACCTGGCAACCTCTGGTTTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGACTCCGAAG
CTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTGTGGGTGTTGGAAGTTAGGGTAGAGAT
CGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAA
GGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCATGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACA
TAG
Protein sequenceShow/hide protein sequence
MSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGREHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRICVQPGNLWFFSRFELHRRNQEHSGVYKLTPK
LYLVSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT