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Spg015596 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015596
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold10:10395112..10399167
RNA-Seq ExpressionSpg015596
SyntenySpg015596
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]1.4e-1766.25Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSAES RS+S+TWLELY ES+H+
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]9.9e-1980.95Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESVH+
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-1666.25Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E VH+
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.3e-2259.26Show/hide
Query:  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLE
        I EKV+AKPAIAESGC       LFGLSY E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLE
Subjt:  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLE

Query:  LYIESVHI
        LY ESVH+
Subjt:  LYIESVHI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]3.9e-1571.67Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        +S  E ++ PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein4.8e-1980.95Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESVH+
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.0e-1666.25Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E VH+
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7UAH6 CCHC-type domain-containing protein3.6e-2259.26Show/hide
Query:  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLE
        I EKV+AKPAIAESGC       LFGLSY E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLE
Subjt:  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLE

Query:  LYIESVHI
        LY ESVH+
Subjt:  LYIESVHI

A0A5A7V2F2 Uncharacterized protein1.9e-1571.67Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        +S  E ++ PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5D3DIM8 Uncharacterized protein6.9e-1866.25Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSAES RS+S+TWLELY ES+H+
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGG
AAAGCTTATGGGTATAAGCAAGCTTGAGAGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGAAAAAGTTCATGCAAAGC
CAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACC
GGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGA
GTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGG
AAAGCTTATGGGTATAAGCAAGCTTGAGAGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGAAAAAGTTCATGCAAAGC
CAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACC
GGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGA
GTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA
Protein sequenceShow/hide protein sequence
MLYNSHERLLDNHLDLLYYPQAFERIVGSSIDRNWKGKLMGISKLERSHRLSLKNKASRANSVPRIKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIKRPRGNRSSLQT
GELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLQGLYNIVLEVVDV