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Spg015601 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015601
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:10799027..10804562
RNA-Seq ExpressionSpg015601
SyntenySpg015601
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.2e-1957Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESVH+             ++++ NV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1456.47Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPGG
        VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++ +V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2161.9Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+    L    G+   + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-1646.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQ----------EGLRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESVH+  +               EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQ----------EGLRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGEEVSEQGDRQAEV--QEHQEVVQEEV
        LHA+FRAK AGGP G      G ++ +V  +E +   +EEV
Subjt:  LHAIFRAKLAGGPGGEEVSEQGDRQAEV--QEHQEVVQEEV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2161.9Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+    L    G+   + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.1e-1957Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESVH+             ++++ NV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPG

A0A5A7V9N3 Reverse transcriptase6.0e-1556.47Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPGG
        VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++ +V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5A7VMG9 Reverse transcriptase6.6e-2261.9Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+    L    G+   + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.1e-1646.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQ----------EGLRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESVH+  +               EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQ----------EGLRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGEEVSEQGDRQAEV--QEHQEVVQEEV
        LHA+FRAK AGGP G      G ++ +V  +E +   +EEV
Subjt:  LHAIFRAKLAGGPGGEEVSEQGDRQAEV--QEHQEVVQEEV

A0A5D3DX39 Reverse transcriptase6.6e-2261.9Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+    L    G+   + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGCTCAACGTTCAGGAGGGTCTACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAGAGGTGTCGGAGCAGGGTGATCGGCAAGCCGAGGTTCAAGAACATCAGGAAGTGGTTCAGGAA
GAGGTAGCCCTGGTTCAACCACCACGTCGTCGCTGCCACAAGCAGAAGGCAGGACGAATCAAAAGGGTCCGGACGGATACCCCATCTCCACCCACCACTGAGTCTGAGAA
GGAAAACACGGAAGTAGAAGTGCAAGAGACTGAGAAAAAGGCAGAAGAAGAAGAGGCTGAGAGAAAGACTCGTGAAGACAGAGGCAAAGGAGTTATCGAAGCAACGGCTA
AAACAAAAGAGGCAGAGCATGAGGAACATCGAGGATTCGGTGATGACCTACCACACTTCTTAAGAGCTGGGATTACAAATTACAGTTGGGAGCAATCTGTTAACTCAAAT
ATAGTTCGAGAATTTTACGCAAATATTGATGAAGAAGAGGGTTTTCAGGCAATTGTCCGTGGGGTAGCAGTAGATTGGAGCCGAGGTGCAATTAATTCTTTATTCAACCT
TCAAGACTTCCCATCTAATGAACAGTTGAATGCAGTTGTTCATGAAGTGGGAATTGAGGGGGCTCAATGGCGGCTGTCGAAAACGGAAAAAAGGACTTTCCAAGCTGCCT
ATCTCAATTGTGAGGCAAATACTTGGTCATTAAGTATAGATGTCGACAAGATCATCTCCAGTGAGATTCACAGTTGCTGGAAGAAGAAGGTGGACAAGCTGTTTTTCTCG
AATACCATAACTATGATATACCAGAGGGCAGAGGTTCCCACGAGTGCAGAAGATGTCATCTTGATAGACAAGGGAATAATAGATACATCAAACTTGGCAAGGCTTCAGAG
GACTCAGGAAGCGCACCAAGGTGGTTTGGATTCAGTTGAAGGTGGTGATTATTTCTTCAATGCTGAAAGAATTATTTTGCTGCAGCAATGCATCGTTTTACAGGATGCTC
AAGTAACGGTTGAAGGTAGTGTTGGATTATCTGTTTTAATTGAGTTCTGCTATGATCAATGTTTTGAATTTTCAAGAGAAAGTGAGGATAGCCAAATTGCCAAGTGCTTG
ATCGGTAGAACGTCATTGGAGTTGAAACACATTCCAAAAGATCCAGAGTTCCGAGAGGATCCTGCTGCCTTGCTCAACGACTATCAAGATTCAAGTTGGGGGTATTTGAA
AGCACCTGAAATGTGGACGACTTCGAGCTATCTTGGAGTTCCCGAGTTGGCAAGGGAGCTTACGGACGTGACTGGAGCATTCGGGCCTCGAGATTGGAGCCAAAGCGATT
GTAATATTTGGGCAAACCCGAGAGCTAGCGTCTCGACGCTTAGCATGATATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGCTCAACGTTCAGGAGGGTCTACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAGAGGTGTCGGAGCAGGGTGATCGGCAAGCCGAGGTTCAAGAACATCAGGAAGTGGTTCAGGAA
GAGGTAGCCCTGGTTCAACCACCACGTCGTCGCTGCCACAAGCAGAAGGCAGGACGAATCAAAAGGGTCCGGACGGATACCCCATCTCCACCCACCACTGAGTCTGAGAA
GGAAAACACGGAAGTAGAAGTGCAAGAGACTGAGAAAAAGGCAGAAGAAGAAGAGGCTGAGAGAAAGACTCGTGAAGACAGAGGCAAAGGAGTTATCGAAGCAACGGCTA
AAACAAAAGAGGCAGAGCATGAGGAACATCGAGGATTCGGTGATGACCTACCACACTTCTTAAGAGCTGGGATTACAAATTACAGTTGGGAGCAATCTGTTAACTCAAAT
ATAGTTCGAGAATTTTACGCAAATATTGATGAAGAAGAGGGTTTTCAGGCAATTGTCCGTGGGGTAGCAGTAGATTGGAGCCGAGGTGCAATTAATTCTTTATTCAACCT
TCAAGACTTCCCATCTAATGAACAGTTGAATGCAGTTGTTCATGAAGTGGGAATTGAGGGGGCTCAATGGCGGCTGTCGAAAACGGAAAAAAGGACTTTCCAAGCTGCCT
ATCTCAATTGTGAGGCAAATACTTGGTCATTAAGTATAGATGTCGACAAGATCATCTCCAGTGAGATTCACAGTTGCTGGAAGAAGAAGGTGGACAAGCTGTTTTTCTCG
AATACCATAACTATGATATACCAGAGGGCAGAGGTTCCCACGAGTGCAGAAGATGTCATCTTGATAGACAAGGGAATAATAGATACATCAAACTTGGCAAGGCTTCAGAG
GACTCAGGAAGCGCACCAAGGTGGTTTGGATTCAGTTGAAGGTGGTGATTATTTCTTCAATGCTGAAAGAATTATTTTGCTGCAGCAATGCATCGTTTTACAGGATGCTC
AAGTAACGGTTGAAGGTAGTGTTGGATTATCTGTTTTAATTGAGTTCTGCTATGATCAATGTTTTGAATTTTCAAGAGAAAGTGAGGATAGCCAAATTGCCAAGTGCTTG
ATCGGTAGAACGTCATTGGAGTTGAAACACATTCCAAAAGATCCAGAGTTCCGAGAGGATCCTGCTGCCTTGCTCAACGACTATCAAGATTCAAGTTGGGGGTATTTGAA
AGCACCTGAAATGTGGACGACTTCGAGCTATCTTGGAGTTCCCGAGTTGGCAAGGGAGCTTACGGACGTGACTGGAGCATTCGGGCCTCGAGATTGGAGCCAAAGCGATT
GTAATATTTGGGCAAACCCGAGAGCTAGCGTCTCGACGCTTAGCATGATATTATAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLLNVQEGLRVSLEEDDVRWLHAIFRAKLAGGPGGEEVSEQGDRQAEVQEHQEVVQE
EVALVQPPRRRCHKQKAGRIKRVRTDTPSPPTTESEKENTEVEVQETEKKAEEEEAERKTREDRGKGVIEATAKTKEAEHEEHRGFGDDLPHFLRAGITNYSWEQSVNSN
IVREFYANIDEEEGFQAIVRGVAVDWSRGAINSLFNLQDFPSNEQLNAVVHEVGIEGAQWRLSKTEKRTFQAAYLNCEANTWSLSIDVDKIISSEIHSCWKKKVDKLFFS
NTITMIYQRAEVPTSAEDVILIDKGIIDTSNLARLQRTQEAHQGGLDSVEGGDYFFNAERIILLQQCIVLQDAQVTVEGSVGLSVLIEFCYDQCFEFSRESEDSQIAKCL
IGRTSLELKHIPKDPEFREDPAALLNDYQDSSWGYLKAPEMWTTSSYLGVPELARELTDVTGAFGPRDWSQSDCNIWANPRASVSTLSMIL