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Spg015602 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015602
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold10:15820172..15822863
RNA-Seq ExpressionSpg015602
SyntenySpg015602
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047449.1 hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa]2.3e-0574.36Show/hide
Query:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR
        MQTHCIGYPHSHV YMDALDQ VC   K +  HSV RIR
Subjt:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.0e-0543.16Show/hide
Query:  IRPRGNRSSLQTRKLAKTVEIELLVPDTLQTSVESSSSSSSS--------------------------VIQQGQQVSLEEDDVCWLHAISLTKLA
        I PRGNR +L T KL KTVEIEL VPDTL TS ESS S+SS+                          V  +G    +  DD+CWLHA+   K A
Subjt:  IRPRGNRSSLQTRKLAKTVEIELLVPDTLQTSVESSSSSSSS--------------------------VIQQGQQVSLEEDDVCWLHAISLTKLA

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]2.3e-0549.43Show/hide
Query:  IRPRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVES-SSSSSSSVIQQGQQVSLEEDDVCWLHAISLTKLA
        +RPRGNR SLQT KL KT                 VEIEL VPDTL TS ES  S+S S+ I +G       DDVCWLHA+   K A
Subjt:  IRPRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVES-SSSSSSSVIQQGQQVSLEEDDVCWLHAISLTKLA

TYJ98643.1 hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa]2.3e-0574.36Show/hide
Query:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR
        MQTHCIGYPHSHV YMDALDQ VC   K +  HSV RIR
Subjt:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]2.3e-0551.19Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVESSSSSSSSV-IQQGQQVSLEEDDVCWLHAISLTKL
        PRGNRSSLQT KL KT                 VEIEL VPDT  TS ESS S+SSS  I +G       DDVCWLHA+   K+
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVESSSSSSSSV-IQQGQQVSLEEDDVCWLHAISLTKL

TrEMBL top hitse value%identityAlignment
A0A5A7U1U5 Uncharacterized protein1.1e-0574.36Show/hide
Query:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR
        MQTHCIGYPHSHV YMDALDQ VC   K +  HSV RIR
Subjt:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR

A0A5A7UAH6 CCHC-type domain-containing protein4.9e-0643.16Show/hide
Query:  IRPRGNRSSLQTRKLAKTVEIELLVPDTLQTSVESSSSSSSS--------------------------VIQQGQQVSLEEDDVCWLHAISLTKLA
        I PRGNR +L T KL KTVEIEL VPDTL TS ESS S+SS+                          V  +G    +  DD+CWLHA+   K A
Subjt:  IRPRGNRSSLQTRKLAKTVEIELLVPDTLQTSVESSSSSSSS--------------------------VIQQGQQVSLEEDDVCWLHAISLTKLA

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.1e-0549.43Show/hide
Query:  IRPRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVES-SSSSSSSVIQQGQQVSLEEDDVCWLHAISLTKLA
        +RPRGNR SLQT KL KT                 VEIEL VPDTL TS ES  S+S S+ I +G       DDVCWLHA+   K A
Subjt:  IRPRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVES-SSSSSSSVIQQGQQVSLEEDDVCWLHAISLTKLA

A0A5D3BHA6 Uncharacterized protein1.1e-0574.36Show/hide
Query:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR
        MQTHCIGYPHSHV YMDALDQ VC   K +  HSV RIR
Subjt:  MQTHCIGYPHSHVYYMDALDQYVCT--KRAVPHSVTRIR

A0A5D3BQ75 Uncharacterized protein1.1e-0551.19Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVESSSSSSSSV-IQQGQQVSLEEDDVCWLHAISLTKL
        PRGNRSSLQT KL KT                 VEIEL VPDT  TS ESS S+SSS  I +G       DDVCWLHA+   K+
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLQTSVESSSSSSSSV-IQQGQQVSLEEDDVCWLHAISLTKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTACAAAGCGGGCTGTACCACATAGTGTTACTAGGATAAG
GCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCTGGTGCCTGATACATTGCAAACGTCTGTTGAAAGTTCCAGTTCAA
GCTCCAGTTCAGTGATTCAGCAGGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTACAAAGCGGGCTGTACCACATAGTGTTACTAGGATAAG
GCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCTGGTGCCTGATACATTGCAAACGTCTGTTGAAAGTTCCAGTTCAA
GCTCCAGTTCAGTGATTCAGCAGGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCA
Protein sequenceShow/hide protein sequence
MQTHCIGYPHSHVYYMDALDQYVCTKRAVPHSVTRIRPRGNRSSLQTRKLAKTVEIELLVPDTLQTSVESSSSSSSSVIQQGQQVSLEEDDVCWLHAISLTKLA