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Spg015625 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015625
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold10:17078093..17082592
RNA-Seq ExpressionSpg015625
SyntenySpg015625
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]2.5e-1041.09Show/hide
Query:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECS-------------GILRKKLEKEGYAIPSSRAGIGYNPLEP
        A KE  + +     +  EAS    KS     E +SN  ILRYVPLSRR+KGESPF +                +++KKL +EG+ IP SR G GY   EP
Subjt:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECS-------------GILRKKLEKEGYAIPSSRAGIGYNPLEP

Query:  VRII--RKWKVAEAHHITIEEMSDPEDKK
        + II  RK KV +++HIT+ E+   E+K+
Subjt:  VRII--RKWKVAEAHHITIEEMSDPEDKK

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]7.2e-1030.08Show/hide
Query:  DACEVQSKEASAHPAKSKAP--------KEASSNVPILRYVPLSRRKKGESPFTECSGIL----------------------------------------
        DA   Q    S    K +AP        ++  SN P+LRY+PLSRRKKGESPF ECS  L                                        
Subjt:  DACEVQSKEASAHPAKSKAP--------KEASSNVPILRYVPLSRRKKGESPFTECSGIL----------------------------------------

Query:  -----------------------------------------RKKLEKEGYAIPSSRAGIGYNPLEPVRII--RKWKVAEAHHITIEEMSDPEDKKND---
                                                 + KL+K+GY+IP+SRAGIGY   EPVRI    K KVA   HIT+EE  D ++ K D   
Subjt:  -----------------------------------------RKKLEKEGYAIPSSRAGIGYNPLEPVRII--RKWKVAEAHHITIEEMSDPEDKKND---

Query:  -----DSLGFYALKL-VDNRVPTSSISRTQEDSRCS
             D +   A++L V  RV TS    + + S CS
Subjt:  -----DSLGFYALKL-VDNRVPTSSISRTQEDSRCS

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]1.1e-1037.04Show/hide
Query:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTEC-SGILR------------------------------------
        A KE  + +        EAS + AKS     E +SN PILRYVPLSRRKKGESPF E   G+ R                                    
Subjt:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTEC-SGILR------------------------------------

Query:  ------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD
              KKL +EG+ IP SR G+GY   EP+RI RK   KV + +HIT++E+   E+K+ D+
Subjt:  ------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]5.6e-1030.39Show/hide
Query:  SNVPILRYVPLSRRKKGESPFTECS---------------------------------------------------------------------------
        SN P+LRY+PLSRRKKGESPF ECS                                                                           
Subjt:  SNVPILRYVPLSRRKKGESPFTECS---------------------------------------------------------------------------

Query:  ------GILRKKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKND--------DSLGFYALK-LVDNRVPTSSISRTQED
                 +KKL+K+GY+IP+SRAGIGY   EP+RI  K   KV    HIT+EE  D ++ K D        D + F A++  V  RV TS    + + 
Subjt:  ------GILRKKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKND--------DSLGFYALK-LVDNRVPTSSISRTQED

Query:  SRCS
        S CS
Subjt:  SRCS

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]9.5e-1034.3Show/hide
Query:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECSGILR-------------------------------------
        A KE  + +        EAS + AKS     E +SN PILRYVPLSRRKKGESPF E    L+                                     
Subjt:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECSGILR-------------------------------------

Query:  ----------------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD
                        KKL +EG+ IP SR G+GY   EP+RI RK   KV +++HIT++E+   E+K+ D+
Subjt:  ----------------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein1.2e-1041.09Show/hide
Query:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECS-------------GILRKKLEKEGYAIPSSRAGIGYNPLEP
        A KE  + +     +  EAS    KS     E +SN  ILRYVPLSRR+KGESPF +                +++KKL +EG+ IP SR G GY   EP
Subjt:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECS-------------GILRKKLEKEGYAIPSSRAGIGYNPLEP

Query:  VRII--RKWKVAEAHHITIEEMSDPEDKK
        + II  RK KV +++HIT+ E+   E+K+
Subjt:  VRII--RKWKVAEAHHITIEEMSDPEDKK

A0A5A7TZU9 Ribonuclease H1.3e-0927.51Show/hide
Query:  KDIPEIVACH---AVNAFEEGDSSSSPSQNAKKESIEEVDACEVQSKEASAHPAKSKAP--KEASSNVPILRYVPLSRRKKGESPFTECSGIL-------
        +D+ EI++         F+      +  +++K +++      E+ ++     P   K    ++  SN P+LRY+PLSRRKKGESPFTECS  L       
Subjt:  KDIPEIVACH---AVNAFEEGDSSSSPSQNAKKESIEEVDACEVQSKEASAHPAKSKAP--KEASSNVPILRYVPLSRRKKGESPFTECSGIL-------

Query:  --------------------------------------------------------------------------RKKLEKEGYAIPSSRAGIGYNPLEPV
                                                                                  +KKL+K+GY+IP+SRAGIGY   EPV
Subjt:  --------------------------------------------------------------------------RKKLEKEGYAIPSSRAGIGYNPLEPV

Query:  RIIRKW--KVAEAHHITIEEMSDPEDKKN--------DDSLGFYALK-LVDNRVPTSSISRTQEDSRCS
        RI  K   KVA   HIT+EE  D E+ K          D + F A++  V  RV TS    + + S CS
Subjt:  RIIRKW--KVAEAHHITIEEMSDPEDKKN--------DDSLGFYALK-LVDNRVPTSSISRTQEDSRCS

A0A5A7UMY2 Reverse transcriptase domain-containing protein5.4e-1137.04Show/hide
Query:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTEC-SGILR------------------------------------
        A KE  + +        EAS + AKS     E +SN PILRYVPLSRRKKGESPF E   G+ R                                    
Subjt:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTEC-SGILR------------------------------------

Query:  ------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD
              KKL +EG+ IP SR G+GY   EP+RI RK   KV + +HIT++E+   E+K+ D+
Subjt:  ------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD

A0A5D3C5A6 RNase H domain-containing protein6.0e-1027.1Show/hide
Query:  KGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDACEVQSKEASAHPAKSKAP------
        +G+RK   V  +++ F  +        F+ K+      +D+ EI++   +    +G   +       K+S  + DA   Q    S    K +AP      
Subjt:  KGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDACEVQSKEASAHPAKSKAP------

Query:  --KEASSNVPILRYVPLSRRKKGESPFTECSGIL------------------------------------------------------------------
          ++  SN P+LRY+PLSRRKKGESPF ECS  L                                                                  
Subjt:  --KEASSNVPILRYVPLSRRKKGESPFTECSGIL------------------------------------------------------------------

Query:  ---------------RKKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKND--------DSLGFYALK-LVDNRVPTSSI
                       +KKL+K+GY+IP+SR  IGY   EPVRI  K   KVA   HIT+EE  D E+ K D        D + F+A++  V  RV TS  
Subjt:  ---------------RKKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKND--------DSLGFYALK-LVDNRVPTSSI

Query:  SRTQEDSRCS
            + S CS
Subjt:  SRTQEDSRCS

A0A5D3DXC7 Reverse transcriptase domain-containing protein4.6e-1034.3Show/hide
Query:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECSGILR-------------------------------------
        A KE  + +        EAS + AKS     E +SN PILRYVPLSRRKKGESPF E    L+                                     
Subjt:  AKKESIEEVDACEVQSKEASAHPAKSK-APKEASSNVPILRYVPLSRRKKGESPFTECSGILR-------------------------------------

Query:  ----------------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD
                        KKL +EG+ IP SR G+GY   EP+RI RK   KV +++HIT++E+   E+K+ D+
Subjt:  ----------------KKLEKEGYAIPSSRAGIGYNPLEPVRIIRKW--KVAEAHHITIEEMSDPEDKKNDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAAAGCAGAAGAGAAAGACAAAAGGTTTAAGAAAACCAAAACTAGTTGTCGTAGAGAATCAGGATTTTGTTCTATCTCGACATCCAGTAACCCTTAAAGATTT
CTTCCCAAAGAACCTTCTTAATGACGATCATAAGGATATCCCTGAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGA
ATGCGAAGAAGGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCAAAAGCTCCAAAAGAGGCGTCGTCAAACGTC
CCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGTTCAGGAATTTTGAGGAAGAAGCTCGAAAAAGAAGGTTATGCCATACC
ATCCTCGAGAGCCGGAATAGGGTACAATCCCCTAGAGCCAGTTCGTATAATCAGAAAATGGAAAGTTGCAGAGGCACATCACATAACGATAGAAGAGATGAGCGATCCAG
AAGATAAAAAGAACGATGATAGTCTTGGGTTTTATGCCCTAAAACTCGTAGATAACCGAGTTCCCACAAGCTCTATCTCAAGAACCCAAGAGGATAGCAGGTGTTCACTT
GTGGTAGTGTCATTTGGAAGCTTACTGTACGCAAAAATTCAAGAGGAGCATTGTGTTGTTCTTCGGCTATACATTGAAATAGGATTTCAATTTGATGAAATATGCTCGAA
TCGGAGTAAAAAATGGCGATTTACGGCTGCTAGAAACGAAGAAAACCCAGAAAACAGAGCAGAAAACAGAGGAATCGGAGAATTGGAGTTTTCTGGAAATTTTCCCGGCC
AGGATCCCGACCAGGATCGAGACCGGGAAATTCCCGACCGGGATCGGGACCGGGAACCAAGGCAAATTAACGAAGACGCGCAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACAAAAGCAGAAGAGAAAGACAAAAGGTTTAAGAAAACCAAAACTAGTTGTCGTAGAGAATCAGGATTTTGTTCTATCTCGACATCCAGTAACCCTTAAAGATTT
CTTCCCAAAGAACCTTCTTAATGACGATCATAAGGATATCCCTGAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGA
ATGCGAAGAAGGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCAAAAGCTCCAAAAGAGGCGTCGTCAAACGTC
CCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGTTCAGGAATTTTGAGGAAGAAGCTCGAAAAAGAAGGTTATGCCATACC
ATCCTCGAGAGCCGGAATAGGGTACAATCCCCTAGAGCCAGTTCGTATAATCAGAAAATGGAAAGTTGCAGAGGCACATCACATAACGATAGAAGAGATGAGCGATCCAG
AAGATAAAAAGAACGATGATAGTCTTGGGTTTTATGCCCTAAAACTCGTAGATAACCGAGTTCCCACAAGCTCTATCTCAAGAACCCAAGAGGATAGCAGGTGTTCACTT
GTGGTAGTGTCATTTGGAAGCTTACTGTACGCAAAAATTCAAGAGGAGCATTGTGTTGTTCTTCGGCTATACATTGAAATAGGATTTCAATTTGATGAAATATGCTCGAA
TCGGAGTAAAAAATGGCGATTTACGGCTGCTAGAAACGAAGAAAACCCAGAAAACAGAGCAGAAAACAGAGGAATCGGAGAATTGGAGTTTTCTGGAAATTTTCCCGGCC
AGGATCCCGACCAGGATCGAGACCGGGAAATTCCCGACCGGGATCGGGACCGGGAACCAAGGCAAATTAACGAAGACGCGCAAAAATAA
Protein sequenceShow/hide protein sequence
MSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDACEVQSKEASAHPAKSKAPKEASSNV
PILRYVPLSRRKKGESPFTECSGILRKKLEKEGYAIPSSRAGIGYNPLEPVRIIRKWKVAEAHHITIEEMSDPEDKKNDDSLGFYALKLVDNRVPTSSISRTQEDSRCSL
VVVSFGSLLYAKIQEEHCVVLRLYIEIGFQFDEICSNRSKKWRFTAARNEENPENRAENRGIGELEFSGNFPGQDPDQDRDREIPDRDRDREPRQINEDAQK