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Spg015630 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015630
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold10:18614846..18620756
RNA-Seq ExpressionSpg015630
SyntenySpg015630
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025774.1 hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa]5.4e-0856Show/hide
Query:  WC------FEYSG---VYKSNQKLYL-----PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAES
        WC      F ++G   +Y  NQ +Y+     P+A  YRVHTGY+ LLTLSVL DNDAVVEIE PVPD LP SAE+
Subjt:  WC------FEYSG---VYKSNQKLYL-----PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAES
KAA0032980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.7e-0757.14Show/hide
Query:  SGVYKSNQKLYL-PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
        S V+   +++ L PEA  YRVHTGY+ LLTLSVLRDNDA+VEIE  VP+ L  S E+S +  S
Subjt:  SGVYKSNQKLYL-PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0761.11Show/hide
Query:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
        V+KSNQKLYL  +  W R     + TG +       L TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SS
Subjt:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.6e-0762.69Show/hide
Query:  VYKSNQKLYL--PEAIWYRVHTGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSS
        ++KSNQKLYL  P      + TG +      SL TLSVLRDNDAVVEIELPVPDTLPTSAES  ++S
Subjt:  VYKSNQKLYL--PEAIWYRVHTGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSS
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0761.11Show/hide
Query:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
        V+KSNQKLYL  +  W R     + TG +       L TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SS
Subjt:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
TrEMBL top hitse value%identityAlignment
A0A5A7SJC7 Uncharacterized protein2.6e-0856Show/hide
Query:  WC------FEYSG---VYKSNQKLYL-----PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAES
        WC      F ++G   +Y  NQ +Y+     P+A  YRVHTGY+ LLTLSVL DNDAVVEIE PVPD LP SAE+
Subjt:  WC------FEYSG---VYKSNQKLYL-----PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAES
A0A5A7SPZ6 DNA/RNA polymerases superfamily protein3.7e-0757.14Show/hide
Query:  SGVYKSNQKLYL-PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
        S V+   +++ L PEA  YRVHTGY+ LLTLSVLRDNDA+VEIE  VP+ L  S E+S +  S
Subjt:  SGVYKSNQKLYL-PEAIWYRVHTGYISLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
A0A5A7T9P7 Gag/pol protein5.8e-0861.11Show/hide
Query:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
        V+KSNQKLYL  +  W R     + TG +       L TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SS
Subjt:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
A0A5D3BAD1 Retrotrans_gag domain-containing protein7.5e-0862.69Show/hide
Query:  VYKSNQKLYL--PEAIWYRVHTGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSS
        ++KSNQKLYL  P      + TG +      SL TLSVLRDNDAVVEIELPVPDTLPTSAES  ++S
Subjt:  VYKSNQKLYL--PEAIWYRVHTGYI------SLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSS
A0A5D3DR18 Gag/pol protein5.8e-0861.11Show/hide
Query:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
        V+KSNQKLYL  +  W R     + TG +       L TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SS
Subjt:  VYKSNQKLYLP-EAIWYR-----VHTGYIS------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGAAAGCAAGGAAGAGAGATTGACCGAGAGTGATGGCGACGCAAGGAAGGGCCAGCTGCGTTCTGAGAGAGGGGAAGAGATCCACGACAGCGACTCATGGCTCGGGCT
AGGCTTGATCTCCGGTGGCGGTGAAGTTGTAGTGGTGCGGTGGCAGCACAGGAATTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGTATTCTGGGG
TGTACAAGTCGAATCAGAAGCTCTATTTGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTC
GTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGTTCCAGTTGTGCTACAGCAGCTGATTCCACAACAGAAGGCAGAAAGTT
TGGAAATTAA
mRNA sequenceShow/hide mRNA sequence
AGAGAAAGCAAGGAAGAGAGATTGACCGAGAGTGATGGCGACGCAAGGAAGGGCCAGCTGCGTTCTGAGAGAGGGGAAGAGATCCACGACAGCGACTCATGGCTCGGGCT
AGGCTTGATCTCCGGTGGCGGTGAAGTTGTAGTGGTGCGGTGGCAGCACAGGAATTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGTATTCTGGGG
TGTACAAGTCGAATCAGAAGCTCTATTTGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTC
GTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGTTCCAGTTGTGCTACAGCAGCTGATTCCACAACAGAAGGCAGAAAGTT
TGGAAATTAA
Protein sequenceShow/hide protein sequence
RESKEERLTESDGDARKGQLRSERGEEIHDSDSWLGLGLISGGGEVVVVRWQHRNFEQTRRISGVLWCFEYSGVYKSNQKLYLPEAIWYRVHTGYISLLTLSVLRDNDAV
VEIELPVPDTLPTSAESSRTSSSCATAADSTTEGRKFGN