; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015646 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015646
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold10:19871137..19881400
RNA-Seq ExpressionSpg015646
SyntenySpg015646
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4278608.1 unnamed protein product [Prunus armeniaca]1.1e-2971.3Show/hide
Query:  LKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKK
        LKG+   AL  KR       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+K
Subjt:  LKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKK

Query:  DKDSQVQV
        DKDS+ ++
Subjt:  DKDSQVQV

GAU48204.1 hypothetical protein TSUD_185410 [Trifolium subterraneum]2.4e-2969.72Show/hide
Query:  KLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNK
        K KG+   AL  KR       +T Q V + ICKFAKKGLTPS+IGVILRDSH IAQVKS+T SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+
Subjt:  KLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNK

Query:  KDKDSQVQV
        KDKDS+ ++
Subjt:  KDKDSQVQV

KAA0039994.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]2.4e-2971.03Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT +KILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]1.1e-2971.96Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]8.2e-3071.96Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

TrEMBL top hitse value%identityAlignment
A0A1D1YPC1 40S ribosomal protein S13 (Fragment)3.9e-3066.38Show/hide
Query:  NFGEHLRKLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIR
        N G    + KG+ G AL  KR       ++ Q V + ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK V+IR
Subjt:  NFGEHLRKLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIR

Query:  KHLERNKKDKDSQVQV
        KHLERN+KDKDS+ ++
Subjt:  KHLERNKKDKDSQVQV

A0A6J1CQC4 40S ribosomal protein S13-like5.2e-3071.96Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

A0A6J1HJL3 40S ribosomal protein S13-like5.2e-3071.96Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

A0A6J1KV63 40S ribosomal protein S13-like5.2e-3071.96Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

A0A6J5UXQ5 Ribosomal_S13_N domain-containing protein5.2e-3071.3Show/hide
Query:  LKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKK
        LKG+   AL  KR       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+K
Subjt:  LKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKK

Query:  DKDSQVQV
        DKDS+ ++
Subjt:  DKDSQVQV

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.3e-3068.81Show/hide
Query:  KLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNK
        K KG+   AL  +R       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLER +
Subjt:  KLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNK

Query:  KDKDSQVQV
        KDKDS+ ++
Subjt:  KDKDSQVQV

P59223 40S ribosomal protein S13-14.5e-3170.09Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

P59224 40S ribosomal protein S13-23.4e-3170.09Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

P62299 40S ribosomal protein S132.8e-2558.88Show/hide
Query:  KGVFGGALSAKRREIDGFPLTI-QVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  +R       LT  +V E + + AKKGL PS+IGVILRDSH +AQV+ VT +KI+RILKA G+AP+I  DLYHLIKK V+IRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTI-QVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

P62302 40S ribosomal protein S132.0e-3170.09Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQV SVT SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S153.2e-3270.09Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV

AT4G00100.1 ribosomal protein S13A2.4e-3270.09Show/hide
Query:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD
        KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KD
Subjt:  KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKD

Query:  KDSQVQV
        KDS+ ++
Subjt:  KDSQVQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTAGGTCTCTTGTGTGGGTCTCGCTGTCCATTACTTGTCGTCGTCTACTACTCTGTGAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTT
TTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCC
TCATTTACCATCAATCAATTCCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGG
AAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTTGGTGGAGCTCTGAGAGCCAAGCGAAGGGAGTTGCCTGACATTGAGGATGAGCAT
GAAATGCATAAAAAAGATTACTTGGTAGATAATTTTGAGTCTGATCGTGATTATACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTAAT
AATGTTAACACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTT
GAATTCTTTAATTCTGATAGTGAGTCATGTGATAGCCTAGTCGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAA
TGGTCTGGCATGATTGATAGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGCTTTGTGAATAGAGACTTAGAAAAG
AGATTTGATGCTGTTACATATTTTCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGGCAGCGTC
GAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCC
CCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTA
GCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGG
GAAATTGATGGCTTTCCTTTGACAATTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCT
CACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATC
AAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCG
GTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTAGGTCTCTTGTGTGGGTCTCGCTGTCCATTACTTGTCGTCGTCTACTACTCTGTGAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTT
TTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCC
TCATTTACCATCAATCAATTCCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGG
AAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTTGGTGGAGCTCTGAGAGCCAAGCGAAGGGAGTTGCCTGACATTGAGGATGAGCAT
GAAATGCATAAAAAAGATTACTTGGTAGATAATTTTGAGTCTGATCGTGATTATACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTAAT
AATGTTAACACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTT
GAATTCTTTAATTCTGATAGTGAGTCATGTGATAGCCTAGTCGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAA
TGGTCTGGCATGATTGATAGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGCTTTGTGAATAGAGACTTAGAAAAG
AGATTTGATGCTGTTACATATTTTCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGGCAGCGTC
GAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCC
CCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTA
GCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGG
GAAATTGATGGCTTTCCTTTGACAATTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCT
CACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATC
AAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCG
GTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG
Protein sequenceShow/hide protein sequence
MAVGLLCGSRCPLLVVVYYSVSVETLCKQRRDATLFVLPKPRALQRRDAVQCSVATLPPIRAYKKAPLGASFTINQFLQSILSFLWLLWSLSQGFLAFLREFFSG
KYLGNFGEHLRKLKGVFGGALRAKRRELPDIEDEHEMHKKDYLVDNFESDRDYTESIESDLDIPECMNPNNVNTFDSCPDDVYSIETDPEELESVHSIESDPEEL
EFFNSDSESCDSLVESFFNTESEESEEHVNVFSDEWSGMIDRPSLDPRPVDIITLDDSVNNCFVNRDLEKRFDAVTYFLQCYYDNLFSDDGPGESFFSPLFAGSV
ETLCKQRRDATLFVLPKPRALQRRDAVQCSVATLPPIRAYKKAPLGASFTINQFILSFLWLLWSLSQGFLAFLREFFSGKYLGNFGEHLRKLKGVFGGALSAKRR
EIDGFPLTIQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQVDFGGEQDPSSGP
VLQEDRSFPLFGSSKYFKA