; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015648 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015648
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionWD repeat-containing protein 20-like
Genome locationscaffold10:19173872..19184895
RNA-Seq ExpressionSpg015648
SyntenySpg015648
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607184.1 hypothetical protein SDJN03_00526, partial [Cucurbita argyrosperma subsp. sororia]8.4e-3189.61Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_022156951.1 dystrophia myotonica WD repeat-containing protein-like [Momordica charantia]1.1e-3088.31Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY +SLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_022948722.1 WD repeat-containing protein 20-like [Cucurbita moschata]8.4e-3189.61Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_022997935.1 WD repeat-containing protein 20-like [Cucurbita maxima]8.4e-3189.61Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_023523294.1 WD repeat-containing protein 20-like [Cucurbita pepo subsp. pepo]8.4e-3189.61Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

TrEMBL top hitse value%identityAlignment
A0A5A7UNI0 Dystrophia myotonica WD repeat-containing protein-like1.2e-3088.31Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEG+VNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1DWI2 dystrophia myotonica WD repeat-containing protein-like5.3e-3188.31Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY +SLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1GA15 WD repeat-containing protein 20-like4.1e-3189.61Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1HZM7 dystrophia myotonica WD repeat-containing protein-like isoform X21.2e-3088.31Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEG+VNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1KBA4 WD repeat-containing protein 20-like4.1e-3189.61Show/hide
Query:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICH FD EAKDGHDLLIG N GDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G37160.1 Transducin/WD40 repeat-like superfamily protein2.9e-2976.32Show/hide
Query:  NLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        +LNS DKDP+KS+H SNSNP+CH F  +AKDGHDLLIG N GDVY VSLRQQLQDVGKKLV AQHYNK+G+VNN +
Subjt:  NLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

AT2G37160.2 Transducin/WD40 repeat-like superfamily protein2.9e-2976.32Show/hide
Query:  NLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        +LNS DKDP+KS+H SNSNP+CH F  +AKDGHDLLIG N GDVY VSLRQQLQDVGKKLV AQHYNK+G+VNN +
Subjt:  NLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

AT3G53390.1 Transducin/WD40 repeat-like superfamily protein5.8e-3055.46Show/hide
Query:  VDIMALLNGYVGVYNENTWSQNKTLAQRKMILSMSHSG-----NLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVG
        V   + ++G     N NT   N     +   L  + S      +LNS +KDP+KS+HFSNSNP+CH FD +AKDGHDLLIG N GDVY VSLRQQLQDV 
Subjt:  VDIMALLNGYVGVYNENTWSQNKTLAQRKMILSMSHSG-----NLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDVYLVSLRQQLQDVG

Query:  KKLVGAQHYNKEGTVNNGQ
        KKLVGA HYNK+G+VNN +
Subjt:  KKLVGAQHYNKEGTVNNGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCGACTTCCTGCTTTATTTCTCGTCTTGGTCTCGCTTCTTCTCAGTTCGAGGCTTCAATCTTTGGCTTTTGGTGTCACATTTCAGGCCCGCTTCAGCACAATTGG
GGATAAGGCTGGGTACCTTATCCTGGTGATACTATGGGTCTTTAACAAAGGTCCTACTCTCTCACTGGGCCGAGAAGGGTTTCTGTTTGGTGGTTGGACCACAAACAAGT
TGTTCATTAGAGGAGCATTGGTACTTAAGAAGGTTGAGGACCCCTGGGGTGGGGTGAAAGACATCACATTCATTCTCCTACTCTTAAAGAATTCCCCTGAAGGCTCCCAC
CAGTCTCCTGCCGCTAGAAGTCTCAGAGTCATATCGTTACACAACCGCGTCCAGACGTTGTTCATCAACGTCGCGACGCTGTCGCGATTCCAGGCGGTGCGGAAAATTCG
TAGCGTCGAGACGCTGGTTCTAGCATCTCGATGTCGTCATGTAGGAGTGAATTCCATCTTGTTATACTATGTCCCCAGCTATCCATCCAGTCTTATCCCTAAAATGGTAG
GCATATTGGATCACATCGTTTACCTTATTCGCAAAGTAGGTCGCATCCATAGTGTTACCAGGATAAGCAACGCAACCTTTTCCTTTCGCCGGTGGTGTCTCCATCTTTCT
CACCATCTCGTCATGGGTTTTGGCTTTGGTTTCTTGTGGGATTTGGGTGTGGATTTCTCACGTGATCACCGCTCATGGTTAGTCGTCGATATCATGGCACTCTTGAATGG
ATACGTTGGGGTGTATAATGAGAATACATGGTCTCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAGTATGTCTCATTCAGGTAACCTTAATTCACCAGATAAGG
ATCCTATTAAGTCTTTGCATTTTAGCAATTCAAATCCTATCTGCCATGTGTTTGATCTTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTCAATTTTGGAGATGTC
TACTTGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGTGCCCAACATTATAACAAAGAGGGCACTGTCAATAACGGGCAAGAGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCGACTTCCTGCTTTATTTCTCGTCTTGGTCTCGCTTCTTCTCAGTTCGAGGCTTCAATCTTTGGCTTTTGGTGTCACATTTCAGGCCCGCTTCAGCACAATTGG
GGATAAGGCTGGGTACCTTATCCTGGTGATACTATGGGTCTTTAACAAAGGTCCTACTCTCTCACTGGGCCGAGAAGGGTTTCTGTTTGGTGGTTGGACCACAAACAAGT
TGTTCATTAGAGGAGCATTGGTACTTAAGAAGGTTGAGGACCCCTGGGGTGGGGTGAAAGACATCACATTCATTCTCCTACTCTTAAAGAATTCCCCTGAAGGCTCCCAC
CAGTCTCCTGCCGCTAGAAGTCTCAGAGTCATATCGTTACACAACCGCGTCCAGACGTTGTTCATCAACGTCGCGACGCTGTCGCGATTCCAGGCGGTGCGGAAAATTCG
TAGCGTCGAGACGCTGGTTCTAGCATCTCGATGTCGTCATGTAGGAGTGAATTCCATCTTGTTATACTATGTCCCCAGCTATCCATCCAGTCTTATCCCTAAAATGGTAG
GCATATTGGATCACATCGTTTACCTTATTCGCAAAGTAGGTCGCATCCATAGTGTTACCAGGATAAGCAACGCAACCTTTTCCTTTCGCCGGTGGTGTCTCCATCTTTCT
CACCATCTCGTCATGGGTTTTGGCTTTGGTTTCTTGTGGGATTTGGGTGTGGATTTCTCACGTGATCACCGCTCATGGTTAGTCGTCGATATCATGGCACTCTTGAATGG
ATACGTTGGGGTGTATAATGAGAATACATGGTCTCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAGTATGTCTCATTCAGGTAACCTTAATTCACCAGATAAGG
ATCCTATTAAGTCTTTGCATTTTAGCAATTCAAATCCTATCTGCCATGTGTTTGATCTTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTCAATTTTGGAGATGTC
TACTTGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGTGCCCAACATTATAACAAAGAGGGCACTGTCAATAACGGGCAAGAGCATTAG
Protein sequenceShow/hide protein sequence
MTRLPALFLVLVSLLLSSRLQSLAFGVTFQARFSTIGDKAGYLILVILWVFNKGPTLSLGREGFLFGGWTTNKLFIRGALVLKKVEDPWGGVKDITFILLLLKNSPEGSH
QSPAARSLRVISLHNRVQTLFINVATLSRFQAVRKIRSVETLVLASRCRHVGVNSILLYYVPSYPSSLIPKMVGILDHIVYLIRKVGRIHSVTRISNATFSFRRWCLHLS
HHLVMGFGFGFLWDLGVDFSRDHRSWLVVDIMALLNGYVGVYNENTWSQNKTLAQRKMILSMSHSGNLNSPDKDPIKSLHFSNSNPICHVFDLEAKDGHDLLIGFNFGDV
YLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQEH