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Spg015649 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015649
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold10:19006572..19008966
RNA-Seq ExpressionSpg015649
SyntenySpg015649
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]2.5e-2059.18Show/hide
Query:  DKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASDRSASPASSAQGEEENEDPDYDLDDLFLDSQPI
        +K++FQ+AT+  +KEWF  NGYLQDID  +N +FLN+KSKLLA LAQ T+DADFQR+L   + AS  S S +S  Q +EE  DP+YDLD+ FLDSQP+
Subjt:  DKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASDRSASPASSAQGEEENEDPDYDLDDLFLDSQPI

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]6.9e-2664.81Show/hide
Query:  VTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA--ASDRSASPASSAQGEEENEDPDYDLDD
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A  AS  S SP+SS Q +EE  DP+YDLDD
Subjt:  VTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA--ASDRSASPASSAQGEEENEDPDYDLDD

Query:  LFLDSQPI
          LDSQP+
Subjt:  LFLDSQPI

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]2.6e-2547.24Show/hide
Query:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK
        MSADQYAMDLGFT VTRSRSR   IR   P ESSTP P+PS NL+RPSGG+VQ+R PVSPSS   SS P  +TYS AVTP+K                  
Subjt:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK

Query:  IKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQ--MAASDRSASPASSAQGEEENEDPDYDLDDLFLDS
                                                 +SKLLAALAQ T+DADFQR+L   + AS  S SP+SS Q +EE  D +YDLDD +LDS
Subjt:  IKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQ--MAASDRSASPASSAQGEEENEDPDYDLDDLFLDS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]1.0e-3266.12Show/hide
Query:  PRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAE
        PRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K ++T++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N E
Subjt:  PRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAE

Query:  FLNDKSKLLAALAQTTSDADF
        FLNDKSKLLAALAQ T+DADF
Subjt:  FLNDKSKLLAALAQTTSDADF

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]2.1e-3050.5Show/hide
Query:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK
        MS DQYAMDLG+T V +SRS+  GI    PMESSTP PRPS NL+ P G ++Q+R   SPSS   SS    +TYS AVTP+K F             + +
Subjt:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK

Query:  IKWWDKFNFQNATLDKVKEW-FAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSAS-PASS-AQGEEENEDPDYDLDDLFLDS
        I+    F       D + E  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQR+L  A +  S+S PA S  Q +EE  D +YDLDD FLDS
Subjt:  IKWWDKFNFQNATLDKVKEW-FAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSAS-PASS-AQGEEENEDPDYDLDDLFLDS

Query:  QP
        QP
Subjt:  QP

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein1.2e-2059.18Show/hide
Query:  DKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASDRSASPASSAQGEEENEDPDYDLDDLFLDSQPI
        +K++FQ+AT+  +KEWF  NGYLQDID  +N +FLN+KSKLLA LAQ T+DADFQR+L   + AS  S S +S  Q +EE  DP+YDLD+ FLDSQP+
Subjt:  DKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL--QMAASDRSASPASSAQGEEENEDPDYDLDDLFLDSQPI

A0A5A7SWC0 Uncharacterized protein3.4e-2664.81Show/hide
Query:  VTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA--ASDRSASPASSAQGEEENEDPDYDLDD
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A  AS  S SP+SS Q +EE  DP+YDLDD
Subjt:  VTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA--ASDRSASPASSAQGEEENEDPDYDLDD

Query:  LFLDSQPI
          LDSQP+
Subjt:  LFLDSQPI

A0A5A7U8A0 Uncharacterized protein1.3e-2547.24Show/hide
Query:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK
        MSADQYAMDLGFT VTRSRSR   IR   P ESSTP P+PS NL+RPSGG+VQ+R PVSPSS   SS P  +TYS AVTP+K                  
Subjt:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK

Query:  IKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQ--MAASDRSASPASSAQGEEENEDPDYDLDDLFLDS
                                                 +SKLLAALAQ T+DADFQR+L   + AS  S SP+SS Q +EE  D +YDLDD +LDS
Subjt:  IKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQ--MAASDRSASPASSAQGEEENEDPDYDLDDLFLDS

A0A5A7UZX0 Polyprotein4.8e-3366.12Show/hide
Query:  PRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAE
        PRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K ++T++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N E
Subjt:  PRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILKIKWWDKFNFQNATLDKVKEWFAANGYLQDIDIKRNAE

Query:  FLNDKSKLLAALAQTTSDADF
        FLNDKSKLLAALAQ T+DADF
Subjt:  FLNDKSKLLAALAQTTSDADF

A0A5D3BI61 Uncharacterized protein1.0e-3050.5Show/hide
Query:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK
        MS DQYAMDLG+T V +SRS+  GI    PMESSTP PRPS NL+ P G ++Q+R   SPSS   SS    +TYS AVTP+K F             + +
Subjt:  MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILK

Query:  IKWWDKFNFQNATLDKVKEW-FAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSAS-PASS-AQGEEENEDPDYDLDDLFLDS
        I+    F       D + E  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQR+L  A +  S+S PA S  Q +EE  D +YDLDD FLDS
Subjt:  IKWWDKFNFQNATLDKVKEW-FAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSAS-PASS-AQGEEENEDPDYDLDDLFLDS

Query:  QP
        QP
Subjt:  QP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCTGACCAATACGCCATGGATTTAGGGTTTACTCCGGTAACCCGATCCAGGTCTCGACAAGGCGGTATACGCCCTATGCCCCCAATGGAGTCATCAACT
CCAGCTCCAAGGCCTTCGGCCAACCTCGTCCGACCTTCAGGCGGAATCGTTCAATTGAGACCTCCTGTCTCTCCTTCTTCTATAATAGGATCATCGATCCCGTCC
TCTTCAACCTACTCTGCGGCAGTAACACCCGAAAAGAGTTTTTCAACCAGTAATCAACCACAGTACAAGACAGTCACTAAGATCTTAAAGATTAAATGGTGGGAC
AAGTTCAATTTTCAAAATGCCACCCTCGACAAAGTAAAGGAATGGTTTGCTGCAAATGGATATCTTCAAGATATCGATATTAAAAGAAATGCCGAATTTCTGAAT
GACAAATCCAAGCTTCTGGCAGCTCTTGCACAGACAACATCTGATGCAGACTTCCAAAGGATTCTTCAGATGGCGGCTTCAGATAGAAGCGCATCCCCAGCTTCT
TCTGCACAAGGAGAAGAAGAAAATGAAGATCCGGATTACGATCTGGACGACCTGTTTCTCGACTCACAACCTATCCGACAAGATATGGAATCTTATCTTCTGAAA
AGAGATAAAGCTGAAGCATCTTCAACAGCTGTTTTCACAAAGGCCACTACTTCTTCGATCAGCCTGACAAACAAAATTAACGAGCTCCAATTGAATAGTGTCCCA
CGGAGCGAGCTCATTCAGGCCCAGGAGAAGCTTAATGAGGCAAATCGCCTGCTGGAGGAAGTACGGACAAAACTCAAATCTAGGGATGCTGAGTTGGAGTCCACC
AAAGCCCAACTTATGGAAGCCAAGGCACACTTGGCCAGTGCTGACTACCTAGCTGATGAGTTCAAGAAAACTAGGAGTTTTACGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCTGACCAATACGCCATGGATTTAGGGTTTACTCCGGTAACCCGATCCAGGTCTCGACAAGGCGGTATACGCCCTATGCCCCCAATGGAGTCATCAACT
CCAGCTCCAAGGCCTTCGGCCAACCTCGTCCGACCTTCAGGCGGAATCGTTCAATTGAGACCTCCTGTCTCTCCTTCTTCTATAATAGGATCATCGATCCCGTCC
TCTTCAACCTACTCTGCGGCAGTAACACCCGAAAAGAGTTTTTCAACCAGTAATCAACCACAGTACAAGACAGTCACTAAGATCTTAAAGATTAAATGGTGGGAC
AAGTTCAATTTTCAAAATGCCACCCTCGACAAAGTAAAGGAATGGTTTGCTGCAAATGGATATCTTCAAGATATCGATATTAAAAGAAATGCCGAATTTCTGAAT
GACAAATCCAAGCTTCTGGCAGCTCTTGCACAGACAACATCTGATGCAGACTTCCAAAGGATTCTTCAGATGGCGGCTTCAGATAGAAGCGCATCCCCAGCTTCT
TCTGCACAAGGAGAAGAAGAAAATGAAGATCCGGATTACGATCTGGACGACCTGTTTCTCGACTCACAACCTATCCGACAAGATATGGAATCTTATCTTCTGAAA
AGAGATAAAGCTGAAGCATCTTCAACAGCTGTTTTCACAAAGGCCACTACTTCTTCGATCAGCCTGACAAACAAAATTAACGAGCTCCAATTGAATAGTGTCCCA
CGGAGCGAGCTCATTCAGGCCCAGGAGAAGCTTAATGAGGCAAATCGCCTGCTGGAGGAAGTACGGACAAAACTCAAATCTAGGGATGCTGAGTTGGAGTCCACC
AAAGCCCAACTTATGGAAGCCAAGGCACACTTGGCCAGTGCTGACTACCTAGCTGATGAGTTCAAGAAAACTAGGAGTTTTACGCCATGA
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPAPRPSANLVRPSGGIVQLRPPVSPSSIIGSSIPSSSTYSAAVTPEKSFSTSNQPQYKTVTKILKIKWWD
KFNFQNATLDKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASDRSASPASSAQGEEENEDPDYDLDDLFLDSQPIRQDMESYLLK
RDKAEASSTAVFTKATTSSISLTNKINELQLNSVPRSELIQAQEKLNEANRLLEEVRTKLKSRDAELESTKAQLMEAKAHLASADYLADEFKKTRSFTP