CuGenDBv2

Gene ID	Spg015660
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RuvB-like helicase
Genome location	scaffold10:18756407..18762412
RNA-Seq Expression	Spg015660
Synteny	Spg015660
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0006338 - chromatin remodeling (biological process) GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016573 - histone acetylation (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0048507 - meristem development (biological process) GO:1900150 - regulation of defense response to fungus (biological process) GO:0000812 - Swr1 complex (cellular component) GO:0031011 - Ino80 complex (cellular component) GO:0035267 - NuA4 histone acetyltransferase complex (cellular component) GO:0097255 - R2TP complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR027238 - RuvB-like IPR041048 - RuvB-like, AAA-lid domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136684.1 ruvB-like protein 1 [Cucumis sativus]

5.7e-19

77.03

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        + EE +  L E G K     L HAVQLLSPASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_008443365.1 PREDICTED: ruvB-like protein 1 [Cucumis melo]

4.4e-19

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Query:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        D + L   G  G    L HAVQLLSPASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_022144519.1 ruvB-like protein 1 [Momordica charantia]

9.8e-19

78.57

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Query:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        D + L   G  G    L HAVQLLSPASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQE QEKYIS
Subjt:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_022935386.1 ruvB-like protein 1 [Cucurbita moschata]

1.3e-18

75.68

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        + EE +  L E G +     L HAVQLLSPASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

XP_038903107.1 ruvB-like protein 1 [Benincasa hispida]

9.8e-19

78.57

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Query:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        D + L   G  G    L HAVQLLSPASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHP0 RuvB-like helicase

2.8e-19

77.03

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        + EE +  L E G K     L HAVQLLSPASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A1S3B7D5 RuvB-like helicase

2.1e-19

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Query:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        D + L   G  G    L HAVQLLSPASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A5D3DPM5 RuvB-like helicase

2.1e-19

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Query:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        D + L   G  G    L HAVQLLSPASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A6J1CSI9 RuvB-like helicase

4.7e-19

78.57

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Query:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        D + L   G  G    L HAVQLLSPASVVAKMNGRESICKGDLEEVC LYLDAKSSARLLQE QEKYIS
Subjt:  DIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

A0A6J1J8N2 RuvB-like helicase

6.2e-19

75.68

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        + EE +  L E G +     L HAVQLLSPASVVAKMNGR+SICKGDLEEVC LYLDAKSSARLLQEQQEKYIS
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

SwissProt top hits

e value

%identity

Alignment

P60122 RuvB-like 1

2.7e-11

47.95

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        + EE ++HL E G+K  L +   +VQLL+PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L +QQ+KY+
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

P60123 RuvB-like 1

2.7e-11

47.95

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        + EE ++HL E G+K  L +   +VQLL+PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L +QQ+KY+
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

Q9DE26 RuvB-like 1

2.7e-11

49.32

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        + EE ++HL E G+K  L +   +VQLL+PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L EQQEK++
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

Q9FMR9 RuvB-like protein 1

1.7e-18

62.2

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Query:  VLCRLQEEDIDHLLEC----GSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        +  R Q E++    EC    G  G    L HAVQLLSPAS+VAKMNGR++ICK D+EEV +LYLDAKSSA+LL EQQEKYIS
Subjt:  VLCRLQEEDIDHLLEC----GSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

Q9Y265 RuvB-like 1

2.7e-11

47.95

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Query:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI
        + EE ++HL E G+K  L +   +VQLL+PA+++AK+NG++SI K  +EE+  L+ DAKSSA++L +QQ+KY+
Subjt:  LQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYI

Arabidopsis top hits

e value

%identity

Alignment

AT5G22330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.2e-19

62.2

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Query:  VLCRLQEEDIDHLLEC----GSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS
        +  R Q E++    EC    G  G    L HAVQLLSPAS+VAKMNGR++ICK D+EEV +LYLDAKSSA+LL EQQEKYIS
Subjt:  VLCRLQEEDIDHLLEC----GSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

Sequences

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CDS sequence

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ATGAAGGAGAAGAAGACGAAGAAGATGAAGGAGACAGAGAAGAAGAAAAAGTCGAGGAAGAATGGTGGGGAAGGGTTGTTTTTATGGGTTTCTCTACTTCAGACTCTCGT
ATCGCTAGCTTGTTTGACAAAGTCTTTTCTTTGTTTCGAGTTAATGGAGAAGCTATTGTCGAGTGGGTCAGAGATGTTATTTAATGATGATGTTGATGTTGAGGAGCCTA
GGTGGGTCTCAGGGATGATTTGTTGGGGAAATAATCATGGGAAGGGTAGGAATCAAAAGCAAATGAAGAGGCCTAAAGGAAAGAAGCCTAGGGGACTAAAGTTATCCGAT
GAAGCTAGTTTCTTGGATTCTGATGGGTTTGGGAGGGAGGGACGAAAGGAGGGGCCTGAGTTTTCTCCTCTCTTTGGAAGCGGTGTCCTTTGTCGTCTGCAGGAGGAGGA
TATTGATCATCTTTTGGAGTGTGGCTCAAAAGGAATACTAGAATTTTTAGAACATGCGGTTCAATTGCTATCCCCTGCTAGCGTTGTGGCAAAAATGAATGGTCGAGAAA
GCATATGCAAGGGAGATCTTGAAGAAGTTTGCACGCTCTATCTGGATGCAAAATCTTCGGCACGGCTTCTTCAAGAGCAGCAAGAAAAATACATCTCTTGA

mRNA sequence

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Protein sequence

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MKEKKTKKMKETEKKKKSRKNGGEGLFLWVSLLQTLVSLACLTKSFLCFELMEKLLSSGSEMLFNDDVDVEEPRWVSGMICWGNNHGKGRNQKQMKRPKGKKPRGLKLSD
EASFLDSDGFGREGRKEGPEFSPLFGSGVLCRLQEEDIDHLLECGSKGILEFLEHAVQLLSPASVVAKMNGRESICKGDLEEVCTLYLDAKSSARLLQEQQEKYIS

Spg015660 (gene) of Sponge gourd (cylindrica) v1 genome