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Spg015676 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015676
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:20169301..20170263
RNA-Seq ExpressionSpg015676
SyntenySpg015676
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038923.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]3.8e-1669.23Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES  S+SSTW+ELY ESV++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

KAA0057197.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-1462.82Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAESS S+S+TW+ELY ES+++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

TYJ98714.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]3.8e-1669.23Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES  S+SSTW+ELY ESV++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

TYK01618.1 uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]4.7e-1465.38Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PR NR SLQT +L KT             PL TLSVLRDNDAVVEIELLVP+TLP SAESS S+SSTW+ELY ESV++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

TYK18765.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-1462.82Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAESS S+S+TW+ELY ES+++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7T7I6 RNA-directed DNA polymerase-like protein1.9e-1669.23Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES  S+SSTW+ELY ESV++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

A0A5A7URC7 Gag/pol protein1.0e-1462.82Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAESS S+S+TW+ELY ES+++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

A0A5D3BI39 RNA-directed DNA polymerase-like protein1.9e-1669.23Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES  S+SSTW+ELY ESV++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

A0A5D3BRI2 Uncharacterized protein2.3e-1465.38Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PR NR SLQT +L KT             PL TLSVLRDNDAVVEIELLVP+TLP SAESS S+SSTW+ELY ESV++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

A0A5D3D5E2 Gag/pol protein1.0e-1462.82Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI
        PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAESS S+S+TW+ELY ES+++
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACACCTGAGGCTATATGGTACCGTGTGCTCACAGGTTATATTCCGTTGTTGACGTTGAGTGTACT
CCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCCATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTG
AGTCTGTCTATATTGTAAATGTTTTT
mRNA sequenceShow/hide mRNA sequence
CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACACCTGAGGCTATATGGTACCGTGTGCTCACAGGTTATATTCCGTTGTTGACGTTGAGTGTACT
CCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCCATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTG
AGTCTGTCTATATTGTAAATGTTTTT
Protein sequenceShow/hide protein sequence
PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYIVNVF