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Spg015709 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015709
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold10:17130649..17134355
RNA-Seq ExpressionSpg015709
SyntenySpg015709
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032810.1 uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa]6.5e-0845.56Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNYRR N +QK K+K K  RK KLV  E++DF  ++  VTL DFFP   L D   + P ++ACHA+NA EE    S P ++ K+E + +
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-0843.33Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNYRR+N +QK K+K K  RKPKLV  E++DF   +  VT+ D FP   L D   + PE++ CH +NA EE    S PS++ ++E + +
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

KAA0059744.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-0852.78Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEE
        +RNYRR+N +QK K+K K  +KPKLV  E++DF    H VTL DFFP   L D   +  E+V CHA+NA EE
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEE

KAA0064171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-0845.74Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC
        +RNYRR N +QK K+K K  RK KLV  E++DF  ++  VTL DFFP   L D   + P +VACHA+NA EE ++S + S +A   + E    C
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC

TYK02858.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-0845.74Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC
        +RNYRR N +QK K+K K  RK KLV  E++DF  ++  VTL DFFP   L D   + P +VACHA+NA EE ++S + S +A   + E    C
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC

TrEMBL top hitse value%identityAlignment
A0A5A7TY01 Ty3-gypsy retrotransposon protein3.2e-0843.33Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNYRR+N +QK K+K K  RKPKLV  E++DF   +  VT+ D FP   L D   + PE++ CH +NA EE    S PS++ ++E + +
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

A0A5A7VEL0 Ty3-gypsy retrotransposon protein3.2e-0845.74Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC
        +RNYRR N +QK K+K K  RK KLV  E++DF  ++  VTL DFFP   L D   + P +VACHA+NA EE ++S + S +A   + E    C
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC

A0A5D3BV50 Ty3-gypsy retrotransposon protein3.2e-0845.74Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC
        +RNYRR N +QK K+K K  RK KLV  E++DF  ++  VTL DFFP   L D   + P +VACHA+NA EE ++S + S +A   + E    C
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC

A0A5D3CDP0 Ty3-gypsy retrotransposon protein1.1e-0852.78Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEE
        +RNYRR+N +QK K+K K  +KPKLV  E++DF    H VTL DFFP   L D   +  E+V CHA+NA EE
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEE

A0A5D3E3J4 Uncharacterized protein3.2e-0845.56Show/hide
Query:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNYRR N +QK K+K K  RK KLV  E++DF  ++  VTL DFFP   L D   + P ++ACHA+NA EE    S P ++ K+E + +
Subjt:  FRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAGAAGAGAAAGACAAAAGGTTTAAGAAAACCAAAACTAGTTGTCGTAGAGAATCAGGATTTTGTTCTATC
TCGACATCCAGTAACCCTTAAAGATTTCTTCCCAAAGAACCTTCTTAATGACGATCATAAGGATATCCCTGAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAG
GCGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAGGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCAAAA
GCTCCAAAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAGAAGAGAAAGACAAAAGGTTTAAGAAAACCAAAACTAGTTGTCGTAGAGAATCAGGATTTTGTTCTATC
TCGACATCCAGTAACCCTTAAAGATTTCTTCCCAAAGAACCTTCTTAATGACGATCATAAGGATATCCCTGAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAG
GCGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAGGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCAAAA
GCTCCAAAAGAGGCGTCGTCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGA
Protein sequenceShow/hide protein sequence
MFRNYRRKNMSQKQKRKTKGLRKPKLVVVENQDFVLSRHPVTLKDFFPKNLLNDDHKDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDACEVQSKEASAHPAKSK
APKEASSNVPILRYVPLSRRKKGESPFTE