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Spg015712 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015712
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag-pol polyprotein
Genome locationscaffold10:18974668..18979034
RNA-Seq ExpressionSpg015712
SyntenySpg015712
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.5e-0460Show/hide
Query:  VSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
        V   ++ VRVA   TQYA+ FGD+TEW AG+  TQ GIHSFP LG
Subjt:  VSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]1.3e-0850.7Show/hide
Query:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLGEV
        D A FVFDT+ LI+ +HV +MR         VRVA   TQYA+ FGD+T+W AG++ TQ  IHSF  LG +
Subjt:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLGEV
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.2e-0468.42Show/hide
Query:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
        VRVA  STQYA+ FGD+TEW A ++ TQ GIHSFP LG
Subjt:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.2e-0571.05Show/hide
Query:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
        VRVA   TQYA+ FGD+TEW AG++ TQ GIHSFPLLG
Subjt:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
KAA0067030.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]2.2e-0547.06Show/hide
Query:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLL
        DTA FVFDT+ LI+ +H                     TQYA+ FGD+TEW AG++ TQ GIHSFP L
Subjt:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLL
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.2e-0460Show/hide
Query:  VSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
        V   ++ VRVA   TQYA+ FGD+TEW AG+  TQ GIHSFP LG
Subjt:  VSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
A0A5A7THR9 Uncharacterized protein6.1e-0950.7Show/hide
Query:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLGEV
        D A FVFDT+ LI+ +HV +MR         VRVA   TQYA+ FGD+T+W AG++ TQ  IHSF  LG +
Subjt:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein1.1e-0571.05Show/hide
Query:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
        VRVA   TQYA+ FGD+TEW AG++ TQ GIHSFPLLG
Subjt:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
A0A5A7VIJ2 Cysteine-rich RLK (Receptor-like protein kinase) 81.1e-0547.06Show/hide
Query:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLL
        DTA FVFDT+ LI+ +H                     TQYA+ FGD+TEW AG++ TQ GIHSFP L
Subjt:  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLL
A0A5D3C1P5 Gag-pol polyprotein1.6e-0468.42Show/hide
Query:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
        VRVA  STQYA+ FGD+TEW A ++ TQ GIHSFP LG
Subjt:  VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTTAGCTCGTCCTTAAGATACCTCTTATATGTTAAGCATTGCCCCTCCAATGAAGAGGTTCTACAAGACAACGACGACAAGGTCATGGCAGAGGAGGATCCATT
GGAAACTCTTGAATGTAAGATGCTTCCTCTAGAAATTCCTGTGCGCTCAACTCTTGTTGCTTCTTCTTCTTTCGTCTCTGTTCCTTCCTTCGACGACGAAAGGGATAAGA
CTGGGTACCTTATCCTGGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCATCCATGTAGGAAACATGCGAGCGGGGGTATCCTAT
GCAATGACATGGGTGAGAGTGGCCAATACGTCGACTCAATATGCCTTCCTTTTTGGGGACGAGACCGAGTGGGAGGCTGGGGACATGACAACACAAAAAGGAATTCACTC
CTTCCCACTTCTAGGAGAAGTAGATGAGTTCATGATTACGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGA
AGAGTTCAGCTGGGGCATGTACTGATGGCAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACG
GAAGAAAGAATGGCTGAGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTTTAGCTCGTCCTTAAGATACCTCTTATATGTTAAGCATTGCCCCTCCAATGAAGAGGTTCTACAAGACAACGACGACAAGGTCATGGCAGAGGAGGATCCATT
GGAAACTCTTGAATGTAAGATGCTTCCTCTAGAAATTCCTGTGCGCTCAACTCTTGTTGCTTCTTCTTCTTTCGTCTCTGTTCCTTCCTTCGACGACGAAAGGGATAAGA
CTGGGTACCTTATCCTGGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCATCCATGTAGGAAACATGCGAGCGGGGGTATCCTAT
GCAATGACATGGGTGAGAGTGGCCAATACGTCGACTCAATATGCCTTCCTTTTTGGGGACGAGACCGAGTGGGAGGCTGGGGACATGACAACACAAAAAGGAATTCACTC
CTTCCCACTTCTAGGAGAAGTAGATGAGTTCATGATTACGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGA
AGAGTTCAGCTGGGGCATGTACTGATGGCAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACG
GAAGAAAGAATGGCTGAGATGTAG
Protein sequenceShow/hide protein sequence
MIFSSSLRYLLYVKHCPSNEEVLQDNDDKVMAEEDPLETLECKMLPLEIPVRSTLVASSSFVSVPSFDDERDKTGYLILVTLCDTARFVFDTDVLIQGIHVGNMRAGVSY
AMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLGEVDEFMITNTREGLTYRYRSISVDTEMFYSEKSSAGACTDGKFIVKYNPLFEPDSDIVTVMMTETRTT
EERMAEM