; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015848 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015848
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold6:39468561..39473151
RNA-Seq ExpressionSpg015848
SyntenySpg015848
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL77781.1 hypothetical protein [Colocasia esculenta]3.0e-1441.43Show/hide
Query:  EHKRSSSSDPDSRKDKKQQTDEGG-RDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSNPDNRDKSQYCLFHRDH
        E   +S+++   + DKK+ +D G  RDR          GR   D    L+ F  YTP ++  EQIL EIRN      P++++S+P  RD+++YC FHRDH
Subjt:  EHKRSSSSDPDSRKDKKQQTDEGG-RDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSNPDNRDKSQYCLFHRDH

Query:  GHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQR
        GH T  C QL DEIE LI+  YL  F   V  ++ RPR+R
Subjt:  GHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.8e-1735.63Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN
        ++YMS  E   SK+           +PD ++   ++   G     D  +G     R R  Q+D  +KFE+YTPT++P EQ+LMEI++  L   P+++K++
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPM
           R K +YCLFHRDHGH+T++C  L +E+E LIR  YLKE+  + +A Q     +    S    +RT    P+
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPM

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]5.8e-1840Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN
        +KYMS EE    KK E E KR+            Q+ +  G   L     + D   G   Q+D  +KFE+YTPT++P EQ+LMEI++  L   P+ +K+ 
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWT
        P+ R K +YCLFHRDHGH+T +C  L +E+E LIR  YLKE+   ++A   R    +  T
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWT

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]6.0e-1533.52Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN
        ++YMS  E   SK+           +PD ++  +++   G     D  +G     R R  Q+D  +KFE+YTPT++P EQ+LMEI++  L   P+++K  
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPMAEAEA
           R K +YCLFHRDH H+T++   L +E+E LIR  YL+E+  + +A Q    ++    S    +RT    P+    A
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPMAEAEA

XP_030948866.1 uncharacterized protein LOC115972746 [Quercus lobata]3.9e-1437.5Show/hide
Query:  DPPFTEEKYMSVEELL-----KSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTN
        D  +   KYM+ E+ L     K KK ER+         D+R+D+ ++    G D+ D  R RP  GR           F  +TP + P +Q+LM+I+N  
Subjt:  DPPFTEEKYMSVEELL-----KSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTN

Query:  LFNAPKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEAD
            P KLK NP+ R + +YC FHRDHGH T NC  L  +IE LIR   L+ F +K   D
Subjt:  LFNAPKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEAD

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128052.5e-1433.91Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN
        ++YMS  E   SK                R+   ++TD+      D  +G     R R  Q+D  +KFE+YT T++P EQ+LMEI+N  L   P+++ ++
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPM
           R K +YCLFH DHGH+T++C  L +E+E LI   YLKE+  + +A Q     +    S    +RT    P+
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPM

A0A6J1DWY0 uncharacterized protein LOC1110252931.8e-1735.63Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN
        ++YMS  E   SK+           +PD ++   ++   G     D  +G     R R  Q+D  +KFE+YTPT++P EQ+LMEI++  L   P+++K++
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPM
           R K +YCLFHRDHGH+T++C  L +E+E LIR  YLKE+  + +A Q     +    S    +RT    P+
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPM

A0A6J1DYL6 uncharacterized protein LOC1110257852.9e-1533.52Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN
        ++YMS  E   SK+           +PD ++  +++   G     D  +G     R R  Q+D  +KFE+YTPT++P EQ+LMEI++  L   P+++K  
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPMAEAEA
           R K +YCLFHRDH H+T++   L +E+E LIR  YL+E+  + +A Q    ++    S    +RT    P+    A
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTSTGNSLRTKTDSPMAEAEA

A0A6J1DZ52 uncharacterized protein LOC1110256122.8e-1840Show/hide
Query:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN
        +KYMS EE    KK E E KR+            Q+ +  G   L     + D   G   Q+D  +KFE+YTPT++P EQ+LMEI++  L   P+ +K+ 
Subjt:  EKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWT
        P+ R K +YCLFHRDHGH+T +C  L +E+E LIR  YLKE+   ++A   R    +  T
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWT

A0A7N2N9G0 Reverse transcriptase2.1e-1337.16Show/hide
Query:  KYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSNP
        KYM+ E+ L +++   E  R      D+R+D+ ++    G DR +  R RP  GR           F  +TP + P +Q+LM+I++      P KLKS+P
Subjt:  KYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGRPDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSNP

Query:  DNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEAD
        + R + +YC FHRDHGH T +C  L  +IE LIR   L+ F +K  AD
Subjt:  DNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGAAGAAGACGCTGCCGGAGAGAACGAGAAGATGGCGGCGCAGGGAGGAGAAAAGACCGAGAGAGAGATAGAGCGAGTGGGGGCTGGCGGCGGCGGGGCTGG
GAGACCGACCCAGAGGAAGAACCAACCAAAGGGCCGGGCTAACTTGGCCCGACCCATATGGTCGGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTA
GCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGACTAGCACCACACCGGTGTGCAGG
TTTTCTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCATGTGGAGCAAAGGGGATGGAGAAGAGAAATCAAGACATAAACACAGAAAA
TTCGGATGGTGACCGCCATCAACGGAGGTCATGGGAAGAAGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAG
CTGATCTCAAAATTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCAAAATTTGTCCAGGATACTTCGCATCCTGGATAAACCTGGTCCTAGCACTAAAACCTATGAT
GAGAGGTTGGTTAGGGATCTGAGGAAGGGGAAGGAGCCCATGGAGCACATTGCAGAATCAGAGACGAGATCGAAGGAAAAGAAGACTGACAGCATGACCAGCAAGATCAG
GAGGCTCAAACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCAAGCACACTTAAAGGACGTAACTACACAATTTCTACCCCAAGCTACGGTCATACAAAGACAGACC
TGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAGTCCGAGGCTAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGTCCAGAGCAGCCGAG
GCCGAGGCTAGGTTGGTCGAGGCCGAGGCCAAGAAAGACAATCCCCCTTGGAAGACCGAGCTTCTAAACACACTAATGGAGCTTGGAAATCCACAGGGATACCTGCAGAA
GTTAAAGGACTCAGGAGCACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAATACATGAGCGTAGAGGAGTTGCTCAAGTCAAAGAAGT
CAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCCCGACAGTAGGAAGGACAAAAAGCAGCAGACCGACGAAGGAGGCCGAGACCGACTAGACCATAGCCGAGGCCGA
CCAGATCATGGCCGAGGCCGGCTAGACCAAAGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAACAGATCTTGATGGAGATAAGGAATAC
AAACCTGTTCAACGCACCCAAGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAATATTGTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTC
AGCTAAATGACGAGATTGAAGTGCTGATTCGGAACGAATACCTAAAGGAGTTCACCACTAAGGTCGAGGCCGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCA
ACTGGAAATTCGTTGAGGACCAAAACAGACTCCCCTATGGCCGAGGCCGAGGCCGAGCCCTACCACACTTCATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGAAGAAGACGCTGCCGGAGAGAACGAGAAGATGGCGGCGCAGGGAGGAGAAAAGACCGAGAGAGAGATAGAGCGAGTGGGGGCTGGCGGCGGCGGGGCTGG
GAGACCGACCCAGAGGAAGAACCAACCAAAGGGCCGGGCTAACTTGGCCCGACCCATATGGTCGGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTGATGCCTCTA
GCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGACTAGCACCACACCGGTGTGCAGG
TTTTCTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCATGTGGAGCAAAGGGGATGGAGAAGAGAAATCAAGACATAAACACAGAAAA
TTCGGATGGTGACCGCCATCAACGGAGGTCATGGGAAGAAGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAG
CTGATCTCAAAATTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCAAAATTTGTCCAGGATACTTCGCATCCTGGATAAACCTGGTCCTAGCACTAAAACCTATGAT
GAGAGGTTGGTTAGGGATCTGAGGAAGGGGAAGGAGCCCATGGAGCACATTGCAGAATCAGAGACGAGATCGAAGGAAAAGAAGACTGACAGCATGACCAGCAAGATCAG
GAGGCTCAAACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCAAGCACACTTAAAGGACGTAACTACACAATTTCTACCCCAAGCTACGGTCATACAAAGACAGACC
TGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAGTCCGAGGCTAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGTCCAGAGCAGCCGAG
GCCGAGGCTAGGTTGGTCGAGGCCGAGGCCAAGAAAGACAATCCCCCTTGGAAGACCGAGCTTCTAAACACACTAATGGAGCTTGGAAATCCACAGGGATACCTGCAGAA
GTTAAAGGACTCAGGAGCACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAATACATGAGCGTAGAGGAGTTGCTCAAGTCAAAGAAGT
CAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCCCGACAGTAGGAAGGACAAAAAGCAGCAGACCGACGAAGGAGGCCGAGACCGACTAGACCATAGCCGAGGCCGA
CCAGATCATGGCCGAGGCCGGCTAGACCAAAGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAACAGATCTTGATGGAGATAAGGAATAC
AAACCTGTTCAACGCACCCAAGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAATATTGTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTC
AGCTAAATGACGAGATTGAAGTGCTGATTCGGAACGAATACCTAAAGGAGTTCACCACTAAGGTCGAGGCCGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCA
ACTGGAAATTCGTTGAGGACCAAAACAGACTCCCCTATGGCCGAGGCCGAGGCCGAGCCCTACCACACTTCATACTAG
Protein sequenceShow/hide protein sequence
MEEEEDAAGENEKMAAQGGEKTEREIERVGAGGGGAGRPTQRKNQPKGRANLARPIWSARAELGHLLSVPDASSRPGFAWFVPKRLRIPKNPRSMSSIGGGVTSTTPVCR
FSLLQATSSPALKQIHCRLSCGAKGMEKRNQDINTENSDGDRHQRRSWEEGRDRPRTESPRPRSPLPSSREKQADLKIAALENKVSAMDQNLSRILRILDKPGPSTKTYD
ERLVRDLRKGKEPMEHIAESETRSKEKKTDSMTSKIRRLKPTDRTILRSPESSTLKGRNYTISTPSYGHTKTDLRNLIEEKRRSAKTAESEARAAEAEARAAEAESRAAE
AEARLVEAEAKKDNPPWKTELLNTLMELGNPQGYLQKLKDSGAQDLEELIDQVDPPFTEEKYMSVEELLKSKKSEREHKRSSSSDPDSRKDKKQQTDEGGRDRLDHSRGR
PDHGRGRLDQRDYLKKFERYTPTSIPQEQILMEIRNTNLFNAPKKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLNDEIEVLIRNEYLKEFTTKVEADQRRPRQRQGWTS
TGNSLRTKTDSPMAEAEAEPYHTSY