; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015855 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015855
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:42875416..42875913
RNA-Seq ExpressionSpg015855
SyntenySpg015855
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.1e-0526.77Show/hide
Query:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL
        +N++A+W  D   GG+GWI                        ++ +AI EGL+AI+   Q    P+  E+++LE + +L+ + QD ++   ++ E+ ++
Subjt:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL

Query:  AFEVGVISFSKCPRVGNRIAHSLARAA
          ++ ++S     R  N++AH LAR A
Subjt:  AFEVGVISFSKCPRVGNRIAHSLARAA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]8.9e-0530.33Show/hide
Query:  MNSDASWNDDWRIGGVGWIVQ----ALAIREGLKAIKLK-DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRI
        +N DA+W D    GG+GWIV+       + E LKA+         + +  E++ LEVV ++N     +++  +IV ++ +    + +  F   P   N +
Subjt:  MNSDASWNDDWRIGGVGWIVQ----ALAIREGLKAIKLK-DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRI

Query:  AHSLARAAAGFMPEHPLSSVEV
        AH +AR A  F+ EH L  V V
Subjt:  AHSLARAAAGFMPEHPLSSVEV

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.4e-0531.25Show/hide
Query:  MNSDASWNDDWRIGGVGWIV------------------------QALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL
        +N+DASW+D    GG+GWI+                        +A AI EGL+ +      R  PL  E ++ EV  +LN + +D++ T  +V E+  L
Subjt:  MNSDASWNDDWRIGGVGWIV------------------------QALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL

Query:  AFEVGVISFSKCPRVGNRIAHSLARAAA
             +++F+K  R  N  AHSLA+ A+
Subjt:  AFEVGVISFSKCPRVGNRIAHSLARAAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.8e-0526.52Show/hide
Query:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLK-----DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVN
        +N+DA+W  D   GG+GWI                        ++ +AI EGL+AI+ +      Q    P+  E+++LE + +L+ + QD ++   ++ 
Subjt:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLK-----DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVN

Query:  EVEELAFEVGVISFSKCPRVGNRIAHSLARAA
        E+ ++  ++ ++S     R  N++AH LAR A
Subjt:  EVEELAFEVGVISFSKCPRVGNRIAHSLARAA

TrEMBL top hitse value%identityAlignment
A0A5C7IQ65 RNase H domain-containing protein6.3e-0431.73Show/hide
Query:  MNSDASWNDDWRIGGVG---WIVQALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAH
        +N+DA+ N   ++ G G    I +ALAI EGL+    ++  +   +  E++AL VV+ +N++    S+  V++N++  +      +SF+  PR+GN++AH
Subjt:  MNSDASWNDDWRIGGVG---WIVQALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAH

Query:  SLAR
         LA+
Subjt:  SLAR

A0A6J1CP26 uncharacterized protein LOC1110134121.5e-0526.77Show/hide
Query:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL
        +N++A+W  D   GG+GWI                        ++ +AI EGL+AI+   Q    P+  E+++LE + +L+ + QD ++   ++ E+ ++
Subjt:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL

Query:  AFEVGVISFSKCPRVGNRIAHSLARAA
          ++ ++S     R  N++AH LAR A
Subjt:  AFEVGVISFSKCPRVGNRIAHSLARAA

A0A6J1D4B6 uncharacterized protein LOC1110171814.3e-0530.33Show/hide
Query:  MNSDASWNDDWRIGGVGWIVQ----ALAIREGLKAIKLK-DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRI
        +N DA+W D    GG+GWIV+       + E LKA+         + +  E++ LEVV ++N     +++  +IV ++ +    + +  F   P   N +
Subjt:  MNSDASWNDDWRIGGVGWIVQ----ALAIREGLKAIKLK-DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRI

Query:  AHSLARAAAGFMPEHPLSSVEV
        AH +AR A  F+ EH L  V V
Subjt:  AHSLARAAAGFMPEHPLSSVEV

A0A6J1DNV9 uncharacterized protein LOC1110224031.1e-0531.25Show/hide
Query:  MNSDASWNDDWRIGGVGWIV------------------------QALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL
        +N+DASW+D    GG+GWI+                        +A AI EGL+ +      R  PL  E ++ EV  +LN + +D++ T  +V E+  L
Subjt:  MNSDASWNDDWRIGGVGWIV------------------------QALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEEL

Query:  AFEVGVISFSKCPRVGNRIAHSLARAAA
             +++F+K  R  N  AHSLA+ A+
Subjt:  AFEVGVISFSKCPRVGNRIAHSLARAAA

A0A6J1DSV1 uncharacterized protein LOC1110236088.7e-0626.52Show/hide
Query:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLK-----DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVN
        +N+DA+W  D   GG+GWI                        ++ +AI EGL+AI+ +      Q    P+  E+++LE + +L+ + QD ++   ++ 
Subjt:  MNSDASWNDDWRIGGVGWI------------------------VQALAIREGLKAIKLK-----DQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVN

Query:  EVEELAFEVGVISFSKCPRVGNRIAHSLARAA
        E+ ++  ++ ++S     R  N++AH LAR A
Subjt:  EVEELAFEVGVISFSKCPRVGNRIAHSLARAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCGGATGCTTCGTGGAACGATGATTGGAGAATTGGTGGTGTTGGTTGGATCGTTCAAGCTTTAGCTATTCGAGAAGGGCTAAAAGCAATTAAATTGAAGGATCA
GCCAAGGAACTTGCCGTTAATTGCTGAAGCAAATGCCCTCGAGGTTGTGAAAGTGCTGAATCATGAAATCCAAGACATCTCGGACACCAAAGTGATAGTCAACGAGGTGG
AAGAGCTTGCGTTTGAGGTAGGAGTCATCTCTTTCTCAAAATGCCCTAGGGTGGGCAATCGAATTGCGCATTCACTCGCGCGAGCTGCGGCAGGGTTCATGCCGGAGCAT
CCTCTGTCGTCCGTCGAAGTCGACAGCAACGTCCATGGTTTTGGGTCAACTAGTTTTGGTCTTCCTTCCACGCTGGAAGAAGAATTTTTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCGGATGCTTCGTGGAACGATGATTGGAGAATTGGTGGTGTTGGTTGGATCGTTCAAGCTTTAGCTATTCGAGAAGGGCTAAAAGCAATTAAATTGAAGGATCA
GCCAAGGAACTTGCCGTTAATTGCTGAAGCAAATGCCCTCGAGGTTGTGAAAGTGCTGAATCATGAAATCCAAGACATCTCGGACACCAAAGTGATAGTCAACGAGGTGG
AAGAGCTTGCGTTTGAGGTAGGAGTCATCTCTTTCTCAAAATGCCCTAGGGTGGGCAATCGAATTGCGCATTCACTCGCGCGAGCTGCGGCAGGGTTCATGCCGGAGCAT
CCTCTGTCGTCCGTCGAAGTCGACAGCAACGTCCATGGTTTTGGGTCAACTAGTTTTGGTCTTCCTTCCACGCTGGAAGAAGAATTTTTTTTGTAG
Protein sequenceShow/hide protein sequence
MNSDASWNDDWRIGGVGWIVQALAIREGLKAIKLKDQPRNLPLIAEANALEVVKVLNHEIQDISDTKVIVNEVEELAFEVGVISFSKCPRVGNRIAHSLARAAAGFMPEH
PLSSVEVDSNVHGFGSTSFGLPSTLEEEFFL