; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015875 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015875
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionBED-type domain-containing protein
Genome locationscaffold6:43641356..43641878
RNA-Seq ExpressionSpg015875
SyntenySpg015875
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR003656 - Zinc finger, BED-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448901.1 PREDICTED: uncharacterized protein LOC103490927 [Cucumis melo]1.2e-7397.89Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPC EVPTDVRDHIQGILSTPKKQ+APKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPSTFPC SPSAQPPIDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

XP_011650424.1 uncharacterized protein LOC101222344 [Cucumis sativus]2.7e-7397.18Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPC EVPTDVRDHIQGILSTPKKQ+APKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPST+PC SPSAQPPIDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

XP_022923437.1 uncharacterized protein LOC111431132 [Cucurbita moschata]7.9e-7397.89Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVP DVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPSTFP  SPSAQPPIDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

XP_038876874.1 uncharacterized protein LOC120069237 isoform X1 [Benincasa hispida]8.4e-7598.59Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQ+APKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPSTFPCPSPSAQPPIDD QKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

XP_038876877.1 uncharacterized protein LOC120069237 isoform X2 [Benincasa hispida]8.4e-7598.59Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQ+APKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPSTFPCPSPSAQPPIDD QKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

TrEMBL top hitse value%identityAlignment
A0A0A0L2E4 BED-type domain-containing protein1.3e-7397.18Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPC EVPTDVRDHIQGILSTPKKQ+APKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPST+PC SPSAQPPIDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

A0A1S3BLP8 uncharacterized protein LOC1034909275.9e-7497.89Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPC EVPTDVRDHIQGILSTPKKQ+APKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPSTFPC SPSAQPPIDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

A0A5D3D7G5 HAT transposon superfamily5.9e-7497.89Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPC EVPTDVRDHIQGILSTPKKQ+APKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPSTFPC SPSAQPPIDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

A0A6J1E9N1 uncharacterized protein LOC1114311323.8e-7397.89Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVP DVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPSTFP  SPSAQPPIDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

A0A6J1KZI0 uncharacterized protein LOC1115002591.6e-7196.48Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
        MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVP DVRD IQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGG

Query:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK
        IHHGSSGQNESNCPST PC SPSAQP IDDAQKQKKDETDKK
Subjt:  IHHGSSGQNESNCPSTFPCPSPSAQPPIDDAQKQKKDETDKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79740.1 hAT transposon superfamily3.4e-1343.48Show/hide
Query:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILS
        MVR +D CWE+   +D    KV+C +C R  +GG+ R+K HL+++ +K + PCA+V  DV D ++ ILS
Subjt:  MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILS

AT3G13020.1 hAT transposon superfamily protein7.5e-0528.42Show/hide
Query:  EHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGIL-------STPKKQRAPKKPKVDMETATNGQQHSSSA
        EH + VD  + +V+CNYC +E +   +R+K HL  +   D+  C +V   +R+  + +L       +TPK +R  K    D       +  SS +
Subjt:  EHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGIL-------STPKKQRAPKKPKVDMETATNGQQHSSSA

AT3G17450.1 hAT dimerisation domain-containing protein3.6e-0730.28Show/hide
Query:  DACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHI-QGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGGIHHG
        D  WEH V  D  ++KV+CNYC +  SGG+YR+K HLA++   ++  C + P +V   + + ++ + KK R         ++  N  Q  SS     +  
Subjt:  DACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHI-QGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGGIHHG

Query:  SSGQNESNC
         + + E  C
Subjt:  SSGQNESNC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGAGGAAGGGATGCTTGCTGGGAACATTGTGTCCTTGTTGATGCAACGAGACAGAAAGTTCGATGTAATTATTGCCAACGGGAATTCAGTGGAGGTGTATACAG
GATGAAATTTCATTTGGCTCAAATTAAAAATAAAGATATAGTTCCATGTGCTGAAGTCCCGACTGATGTTCGAGACCATATTCAAGGTATATTAAGCACTCCTAAGAAAC
AGAGGGCACCCAAGAAACCAAAGGTGGATATGGAAACTGCAACAAATGGACAGCAACATAGCTCCTCTGCTAGTGGTGGCATTCATCATGGATCCAGTGGACAGAATGAA
AGCAACTGCCCATCAACGTTTCCGTGCCCTTCACCAAGTGCACAACCACCAATTGATGATGCTCAAAAGCAGAAGAAGGATGAGACTGATAAAAAAAATATGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGAGGAAGGGATGCTTGCTGGGAACATTGTGTCCTTGTTGATGCAACGAGACAGAAAGTTCGATGTAATTATTGCCAACGGGAATTCAGTGGAGGTGTATACAG
GATGAAATTTCATTTGGCTCAAATTAAAAATAAAGATATAGTTCCATGTGCTGAAGTCCCGACTGATGTTCGAGACCATATTCAAGGTATATTAAGCACTCCTAAGAAAC
AGAGGGCACCCAAGAAACCAAAGGTGGATATGGAAACTGCAACAAATGGACAGCAACATAGCTCCTCTGCTAGTGGTGGCATTCATCATGGATCCAGTGGACAGAATGAA
AGCAACTGCCCATCAACGTTTCCGTGCCCTTCACCAAGTGCACAACCACCAATTGATGATGCTCAAAAGCAGAAGAAGGATGAGACTGATAAAAAAAATATGGAGTAG
Protein sequenceShow/hide protein sequence
MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPTDVRDHIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGGIHHGSSGQNE
SNCPSTFPCPSPSAQPPIDDAQKQKKDETDKKNME