; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg015914 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015914
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold6:40020280..40029008
RNA-Seq ExpressionSpg015914
SyntenySpg015914
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3765.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3765.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3765.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3765.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3765.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein7.7e-3865.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
A0A5A7TXW1 Retrotransposon protein7.7e-3865.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
A0A5A7U476 Retrotransposon protein7.7e-3865.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
A0A5A7VG29 Retrotransposon protein7.7e-3865.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
A0A5D3BDX0 Retrotransposon protein7.7e-3865.91Show/hide
Query:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCF ILC LLRT +GL  TE+VDVEEMVAMFLHI
Subjt:  HELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHI

Query:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +AHDVKNRVI+R+F RSGETISRHFN  L AV
Subjt:  VAHDVKNRVIRRQFARSGETISRHFNTTLQAV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.7e-1140Show/hide
Query:  FRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETISRHFNTTLQAV
        +++++  +  C E+ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R ++  F  SGETISRHFN  L AV
Subjt:  FRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETISRHFNTTLQAV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTTCAATTGCTTCCCGAGAAGGCATCGCCATAGAAATTAGAGAGAAATTGGAGAAGGGGAAGTTGATCGGAGGAGTATTATCTTTGGAAATTGAGTTGTGGAA
TAAATTGGAGAAATTGGAATCGATCGGGTGTTCGGGACCTAAAGAAGAGCAAAAGAAGAGAAAAGAATCAAGTTGGAAGTTTAATGAAAGAGGCAAACCTGAGAGGTTCG
TTGTAATCCCTTCCACTGGTTCGCATCTACGACTGTCGATCTCTGTTACTTCTGTGTGTTTTTATGTGATTTGTGTTCTGTATCCTTCTCGTCCCCTGTATGTTCTTCGC
ATGTCTTTCCCTGTACAACTGCTGGAAACCCACCCCATGCTGCTTCAGCTTGTCGTGGGTGTCGACGATAGGACTCGGTATCCGCCTGGTAGATTGGAGCAAGGTGAGAG
GTGGGACGAAGGTGAACAAGCCGAAACCCGATCTCCACCTACTTCCGTTTCGTTTCACGCATCCATATCTCATATAACGGTTCGCTTGGAAAACACCGTTATATTCGAGG
AATTTACACATCGTGGGTTGATTGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCGTATCCAACATTTCCAGAAGCAGAGTACGCATTTAGGCAGTACG
TTACGGGCACACGCTGAAGTAGTAACGTACGTAATGGACTCCATAAGTCCTCATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTGTTCAACTT
GATTGCCTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCATACATCCGCCACCAGATAAGGCAATTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGT
GCTGTCGAGAAAGCACAAGGATGGATAGGAGATGTTTTACAATACTATGTAGTTTGCTCAGAACGACTTCCGGGTTGGTAGGAACGGAAATCGTAGACGTCGAAGAGATG
GTCGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGACACTTCAACACGACGTTGCA
GGCCGTGTTCGACAAAGATCGGGCGAGTGGCGGCAGGTGCGAAGTTCCAGTCGAGAAGGCAGACAGCACCCACGGTGACGACGATGGCGATAACCTTTTCCAGGATTCCC
AAGAGCCTTACATCCCCATACCGCCAGACCTTAATCTTGGTGCAGACGTGGAGTTCGAGGATGTCCCTATCACACCAACGAGCCGACCGAGCACTGCAGGGTCCTCACAA
GGACGGAAACGGAGCATAGCAGCATATGAAGTTGATGCACTTGAGATTATGCGGCAGTCAGTGGTGATGCAAGAGGCACAGTTCACCAAGATCGCTGACTGGCCGGACAC
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTTTCAATTGCTTCCCGAGAAGGCATCGCCATAGAAATTAGAGAGAAATTGGAGAAGGGGAAGTTGATCGGAGGAGTATTATCTTTGGAAATTGAGTTGTGGAA
TAAATTGGAGAAATTGGAATCGATCGGGTGTTCGGGACCTAAAGAAGAGCAAAAGAAGAGAAAAGAATCAAGTTGGAAGTTTAATGAAAGAGGCAAACCTGAGAGGTTCG
TTGTAATCCCTTCCACTGGTTCGCATCTACGACTGTCGATCTCTGTTACTTCTGTGTGTTTTTATGTGATTTGTGTTCTGTATCCTTCTCGTCCCCTGTATGTTCTTCGC
ATGTCTTTCCCTGTACAACTGCTGGAAACCCACCCCATGCTGCTTCAGCTTGTCGTGGGTGTCGACGATAGGACTCGGTATCCGCCTGGTAGATTGGAGCAAGGTGAGAG
GTGGGACGAAGGTGAACAAGCCGAAACCCGATCTCCACCTACTTCCGTTTCGTTTCACGCATCCATATCTCATATAACGGTTCGCTTGGAAAACACCGTTATATTCGAGG
AATTTACACATCGTGGGTTGATTGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCGTATCCAACATTTCCAGAAGCAGAGTACGCATTTAGGCAGTACG
TTACGGGCACACGCTGAAGTAGTAACGTACGTAATGGACTCCATAAGTCCTCATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTGTTCAACTT
GATTGCCTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCATACATCCGCCACCAGATAAGGCAATTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGT
GCTGTCGAGAAAGCACAAGGATGGATAGGAGATGTTTTACAATACTATGTAGTTTGCTCAGAACGACTTCCGGGTTGGTAGGAACGGAAATCGTAGACGTCGAAGAGATG
GTCGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGACACTTCAACACGACGTTGCA
GGCCGTGTTCGACAAAGATCGGGCGAGTGGCGGCAGGTGCGAAGTTCCAGTCGAGAAGGCAGACAGCACCCACGGTGACGACGATGGCGATAACCTTTTCCAGGATTCCC
AAGAGCCTTACATCCCCATACCGCCAGACCTTAATCTTGGTGCAGACGTGGAGTTCGAGGATGTCCCTATCACACCAACGAGCCGACCGAGCACTGCAGGGTCCTCACAA
GGACGGAAACGGAGCATAGCAGCATATGAAGTTGATGCACTTGAGATTATGCGGCAGTCAGTGGTGATGCAAGAGGCACAGTTCACCAAGATCGCTGACTGGCCGGACAC
TTAG
Protein sequenceShow/hide protein sequence
MKVSIASREGIAIEIREKLEKGKLIGGVLSLEIELWNKLEKLESIGCSGPKEEQKKRKESSWKFNERGKPERFVVIPSTGSHLRLSISVTSVCFYVICVLYPSRPLYVLR
MSFPVQLLETHPMLLQLVVGVDDRTRYPPGRLEQGERWDEGEQAETRSPPTSVSFHASISHITVRLENTVIFEEFTHRGLIATNKLTSLREHYTSRIQHFQKQSTHLGST
LRAHAEVVTYVMDSISPHELVSILSIMADSQRQLFNLIAFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFTILCSLLRTTSGLVGTEIVDVEEM
VAMFLHIVAHDVKNRVIRRQFARSGETISRHFNTTLQAVFDKDRASGGRCEVPVEKADSTHGDDDGDNLFQDSQEPYIPIPPDLNLGADVEFEDVPITPTSRPSTAGSSQ
GRKRSIAAYEVDALEIMRQSVVMQEAQFTKIADWPDT