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Spg015926 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015926
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:43319407..43319817
RNA-Seq ExpressionSpg015926
SyntenySpg015926
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]2.3e-0536.28Show/hide
Query:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF
        GGVGWV+RDS G +++AG     R     A+E EAIR  L A +    +SG    L VESD+L V++++ GE   D +  +++F       + +   F +
Subjt:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF

Query:  CRRNSNFLAHQLA
          RN N  AH++A
Subjt:  CRRNSNFLAHQLA

CAB4279811.1 unnamed protein product [Prunus armeniaca]1.7e-0535.71Show/hide
Query:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF
        GGVGWV+RDS G +++AGC    R     A+E +AIR  L A +    +SG    L VESD+L ++++L GE   D +  +++F       + +   F +
Subjt:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF

Query:  CRRNSNFLAHQL
          RN N  AH++
Subjt:  CRRNSNFLAHQL

ONI22498.1 hypothetical protein PRUPE_2G133200 [Prunus persica]1.0e-0531.58Show/hide
Query:  MRGGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEE-EDFSDSSLIFAEILEFAKGEKIEF
        M+GG GWVIRD  G +++AG  R  R       E +AIR  + A      + G    ++VESD+LS ++++ G+   D     L+F       + +++ F
Subjt:  MRGGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEE-EDFSDSSLIFAEILEFAKGEKIEF

Query:  DFCRRNSNFLAHQLAHAATVFGDFSVFFWLFFP
         +  R+ N  AH++A  A   G   +F+W F P
Subjt:  DFCRRNSNFLAHQLAHAATVFGDFSVFFWLFFP

XP_021848754.1 uncharacterized protein LOC110788421 [Spinacia oleracea]7.1e-0733.08Show/hide
Query:  RGGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLS-AFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKG-EKIEF
        R GVG V+RD+TG ++     +   NC  K  E  A   GL  AF  G R+      +++ESD  S++ +L G+  + S + +I  + L      +   F
Subjt:  RGGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLS-AFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKG-EKIEF

Query:  DFCRRNSNFLAHQLAHAATVFGDFSVFFWL
         F +R+ N LAH +A A+T F +  V  WL
Subjt:  DFCRRNSNFLAHQLAHAATVFGDFSVFFWL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.0e-0533.86Show/hide
Query:  RGGVGWVIRDSTGSLIEAGCSRFSRNC-PTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKG-EKIEF
        RGG+GW+IR   G ++ AG +RF   C   K LE  AI  G    LR     G   PL +E+D+  V  +L  + ED + +  +  EIL      E + F
Subjt:  RGGVGWVIRDSTGSLIEAGCSRFSRNC-PTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKG-EKIEF

Query:  DFCRRNSNFLAHQLAHAATVFGDFSVF
            R +N  AH LA  A+V  +  ++
Subjt:  DFCRRNSNFLAHQLAHAATVFGDFSVF

TrEMBL top hitse value%identityAlignment
A0A251QFD7 RNase H domain-containing protein4.9e-0631.58Show/hide
Query:  MRGGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEE-EDFSDSSLIFAEILEFAKGEKIEF
        M+GG GWVIRD  G +++AG  R  R       E +AIR  + A      + G    ++VESD+LS ++++ G+   D     L+F       + +++ F
Subjt:  MRGGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEE-EDFSDSSLIFAEILEFAKGEKIEF

Query:  DFCRRNSNFLAHQLAHAATVFGDFSVFFWLFFP
         +  R+ N  AH++A  A   G   +F+W F P
Subjt:  DFCRRNSNFLAHQLAHAATVFGDFSVFFWLFFP

A0A6J1DNV9 uncharacterized protein LOC1110224034.9e-0633.86Show/hide
Query:  RGGVGWVIRDSTGSLIEAGCSRFSRNC-PTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKG-EKIEF
        RGG+GW+IR   G ++ AG +RF   C   K LE  AI  G    LR     G   PL +E+D+  V  +L  + ED + +  +  EIL      E + F
Subjt:  RGGVGWVIRDSTGSLIEAGCSRFSRNC-PTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKG-EKIEF

Query:  DFCRRNSNFLAHQLAHAATVFGDFSVF
            R +N  AH LA  A+V  +  ++
Subjt:  DFCRRNSNFLAHQLAHAATVFGDFSVF

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.1e-0536.28Show/hide
Query:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF
        GGVGWV+RDS G +++AG     R     A+E EAIR  L A +    +SG    L VESD+L V++++ GE   D +  +++F       + +   F +
Subjt:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF

Query:  CRRNSNFLAHQLA
          RN N  AH++A
Subjt:  CRRNSNFLAHQLA

A0A6J5UV01 Reverse transcriptase domain-containing protein8.4e-0635.71Show/hide
Query:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF
        GGVGWV+RDS G +++AGC    R     A+E +AIR  L A +    +SG    L VESD+L ++++L GE   D +  +++F       + +   F +
Subjt:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGE-EEDFSDSSLIFAEILEFAKGEKIEFDF

Query:  CRRNSNFLAHQL
          RN N  AH++
Subjt:  CRRNSNFLAHQL

A2YJD5 Reverse transcriptase domain-containing protein4.2e-0529.55Show/hide
Query:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKGEK-IEFDF
        GG+G ++R+S G ++ A C   +R       E  A R GL+  L+ T       P+++ESD L  ++++  +EE+ SD + +  EI     G + I    
Subjt:  GGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKGEK-IEFDF

Query:  CRRNSNFLAHQLAHAATVFGDFSVFFWLFFPC
          RN N ++H LA+      +    FWL   C
Subjt:  CRRNSNFLAHQLAHAATVFGDFSVFFWLFFPC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGCGGGGTGGGGTGGGTGATTCGAGACTCTACCGGATCTTTAATCGAAGCAGGTTGCAGTCGTTTTTCCCGCAATTGTCCAACCAAGGCCCTTGAAGGTGAAGC
GATCCGTGTAGGTCTGAGTGCCTTTCTCAGAGGGACGAGAGAAAGTGGATGCAGACCGCCTCTGCTTGTTGAATCCGACGCCCTTAGTGTCGTGAAAGTGCTTATGGGTG
AAGAAGAAGACTTCTCGGATTCGAGTTTGATTTTCGCCGAGATTTTGGAATTTGCTAAGGGAGAAAAGATCGAGTTCGATTTTTGTAGGAGGAACTCTAATTTTTTGGCC
CATCAGCTTGCTCATGCAGCAACTGTTTTTGGGGATTTCTCTGTATTTTTTTGGCTCTTCTTCCCCTGTTTTGGAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGCGGGGTGGGGTGGGTGATTCGAGACTCTACCGGATCTTTAATCGAAGCAGGTTGCAGTCGTTTTTCCCGCAATTGTCCAACCAAGGCCCTTGAAGGTGAAGC
GATCCGTGTAGGTCTGAGTGCCTTTCTCAGAGGGACGAGAGAAAGTGGATGCAGACCGCCTCTGCTTGTTGAATCCGACGCCCTTAGTGTCGTGAAAGTGCTTATGGGTG
AAGAAGAAGACTTCTCGGATTCGAGTTTGATTTTCGCCGAGATTTTGGAATTTGCTAAGGGAGAAAAGATCGAGTTCGATTTTTGTAGGAGGAACTCTAATTTTTTGGCC
CATCAGCTTGCTCATGCAGCAACTGTTTTTGGGGATTTCTCTGTATTTTTTTGGCTCTTCTTCCCCTGTTTTGGAAGATAG
Protein sequenceShow/hide protein sequence
MRGGVGWVIRDSTGSLIEAGCSRFSRNCPTKALEGEAIRVGLSAFLRGTRESGCRPPLLVESDALSVVKVLMGEEEDFSDSSLIFAEILEFAKGEKIEFDFCRRNSNFLA
HQLAHAATVFGDFSVFFWLFFPCFGR