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Spg015936 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015936
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold6:40180854..40181726
RNA-Seq ExpressionSpg015936
SyntenySpg015936
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG68750.1 hypothetical protein EZV62_003685 [Acer yangbiense]3.3e-2056.98Show/hide
Query:  RSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQS
        RSQL  ++K+  +++QY+ Q K+I DKF AIGEPLSY DHL Y+LEG+G EY+AFVT I+NR D+PS+ DV SLLL+++ +L K++
Subjt:  RSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQS

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]1.8e-2662.5Show/hide
Query:  QLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL
        ++Q+++KD LSVSQY+A+IK+I  K  +IGEP+S  DH++YI+EG+G+EYNAFVT IQNR+D  +L DVR+LLLAYD +LEKQ+SVD LN++QAN+
Subjt:  QLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]9.4e-3168.63Show/hide
Query:  MTLRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQAN
        M L+++LQ +RKD  SVSQY+A+IK+IADKF A+GEPLSY DHLA++L+G+G EYNAFVT I NR D PSL DVRSLLLAY+A+L+KQ++VD LN+ QAN
Subjt:  MTLRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQAN

Query:  LV
        LV
Subjt:  LV

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]2.7e-3070.1Show/hide
Query:  SQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL
        SQLQKI+KD L+VSQY+AQIKD+ D F AIGEPLSY DHL+YILEG+G EYN FV+ I NRT+RPS+ADVR+LL+ YD++LEKQ++ D+L LIQAN+
Subjt:  SQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]1.7e-2763.37Show/hide
Query:  MTLRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQAN
        M+L+++LQKIRKD+LS+SQY++QIKD+ADKF  +GE +SY DHL +IL+G+G EYNAFVT IQN  D  S+ DV SLLL+Y+AQLEKQ+++D+LN+ QA 
Subjt:  MTLRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQAN

Query:  L
        L
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A5C7IHH0 Uncharacterized protein1.6e-2056.98Show/hide
Query:  RSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQS
        RSQL  ++K+  +++QY+ Q K+I DKF AIGEPLSY DHL Y+LEG+G EY+AFVT I+NR D+PS+ DV SLLL+++ +L K++
Subjt:  RSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQS

A0A6J1D6N7 uncharacterized protein LOC1110174388.9e-2762.5Show/hide
Query:  QLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL
        ++Q+++KD LSVSQY+A+IK+I  K  +IGEP+S  DH++YI+EG+G+EYNAFVT IQNR+D  +L DVR+LLLAYD +LEKQ+SVD LN++QAN+
Subjt:  QLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL

A0A6J1DQX7 uncharacterized protein LOC1110223154.5e-3168.63Show/hide
Query:  MTLRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQAN
        M L+++LQ +RKD  SVSQY+A+IK+IADKF A+GEPLSY DHLA++L+G+G EYNAFVT I NR D PSL DVRSLLLAY+A+L+KQ++VD LN+ QAN
Subjt:  MTLRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQAN

Query:  LV
        LV
Subjt:  LV

A0A7J0DER3 Uncharacterized protein2.3e-1949.49Show/hide
Query:  LRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL
        LR+ LQ I+KD L+   Y+ + + + +   +IGEP++Y DHL Y L G+G +YN FVT IQ++  RPS+ +V SLLL+YDA+LE+QS+ D L+ +QANL
Subjt:  LRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL

A0A7J0E8R3 Uncharacterized protein2.3e-1949.49Show/hide
Query:  LRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL
        LR+ LQ I+KD L+   Y+ + + + +   +IGEP++Y DHL Y L G+G +YN FVT IQ++  RPS+ +V SLLL+YDA+LE+QS+ D L+ +QANL
Subjt:  LRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTACGTTCTCAGCTTCAAAAGATAAGAAAAGACAGCCTCTCGGTCTCTCAATACGTAGCCCAAATCAAAGATATAGCTGACAAATTTTGTGCCATTGGTGAACC
CTTGTCTTACTGTGATCATTTAGCTTATATACTTGAAGGTGTGGGTCTTGAATATAATGCATTTGTTACCAAAATCCAAAACCGGACCGATCGCCCATCTTTAGCTGATG
TTAGAAGTTTGTTACTAGCTTATGATGCTCAGTTAGAAAAGCAGTCTTCTGTTGATAACTTGAACCTTATTCAAGCTAATCTTGTAATCTCTCTGCCTCTAATTACAATG
GTAAACATCCACCTCGGTCCTCTGGTTGTCCTCAAGCCCCGCCGCACCCTCCCAAATGGCCTTTCAACAATCAATAGCACCCACAATGCCAAATTTGTGGCCTTGGAACG
GATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGTATGAACATGGAAGTTCTTGGGAGAATTTTGGCAGCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTTACGTTCTCAGCTTCAAAAGATAAGAAAAGACAGCCTCTCGGTCTCTCAATACGTAGCCCAAATCAAAGATATAGCTGACAAATTTTGTGCCATTGGTGAACC
CTTGTCTTACTGTGATCATTTAGCTTATATACTTGAAGGTGTGGGTCTTGAATATAATGCATTTGTTACCAAAATCCAAAACCGGACCGATCGCCCATCTTTAGCTGATG
TTAGAAGTTTGTTACTAGCTTATGATGCTCAGTTAGAAAAGCAGTCTTCTGTTGATAACTTGAACCTTATTCAAGCTAATCTTGTAATCTCTCTGCCTCTAATTACAATG
GTAAACATCCACCTCGGTCCTCTGGTTGTCCTCAAGCCCCGCCGCACCCTCCCAAATGGCCTTTCAACAATCAATAGCACCCACAATGCCAAATTTGTGGCCTTGGAACG
GATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGTATGAACATGGAAGTTCTTGGGAGAATTTTGGCAGCATTTTAG
Protein sequenceShow/hide protein sequence
MTLRSQLQKIRKDSLSVSQYVAQIKDIADKFCAIGEPLSYCDHLAYILEGVGLEYNAFVTKIQNRTDRPSLADVRSLLLAYDAQLEKQSSVDNLNLIQANLVISLPLITM
VNIHLGPLVVLKPRRTLPNGLSTINSTHNAKFVALERIVGSSIDRNWKGKLMGISKLESMNMEVLGRILAAF