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Spg015955 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg015955
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:43787721..43794666
RNA-Seq ExpressionSpg015955
SyntenySpg015955
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4376439.1 hypothetical protein G4B88_000127 [Cannabis sativa]1.6e-0834.19Show/hide
Query:  LNYHQSDHKPILVSMEMTRSRINSRNRPRKVR--FEESWAHLEECKNIVKEIW----ARGSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILD
        L++  SDH+P++V M +        +  +K R  FEE+W   E+CK+I++E W    A GS  D   K        A+ RW E+ IR++F ++D + IL 
Subjt:  LNYHQSDHKPILVSMEMTRSRINSRNRPRKVR--FEESWAHLEECKNIVKEIW----ARGSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILD

Query:  IPLGNLQAKDDIIWGHN
        IP  + +  D I+W +N
Subjt:  IPLGNLQAKDDIIWGHN

XP_008351965.2 uncharacterized protein LOC103415096 [Malus domestica]7.0e-0924.38Show/hide
Query:  GSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGIL
        GS++ S      S +      W  D ++     S+VEAILD+  G+   KD ++W H  RG++++    + S  ++  ++  S+   +        T   
Subjt:  GSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGIL

Query:  LGVNVEWLVGTQISKDFSLKRHSVFTEGETNEREGEREGKRRKIWSHFFPFLCISDLGGREGDDPKACWE--------QARKSKLDPQAIIREIEILQGN
        L V V WL G     +    R  V +      + GE E    ++  +   ++  +            CW         Q     + P  ++  +     +
Subjt:  LGVNVEWLVGTQISKDFSLKRHSVFTEGETNEREGEREGKRRKIWSHFFPFLCISDLGGREGDDPKACWE--------QARKSKLDPQAIIREIEILQGN

Query:  RTHLTEFGAPSTRCESRSSQG---SWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLP
            T F   S    ++SS G    W PP QG  KIN DASW      G  G +ARD  G F+     KI        +E  AI+ G     + +     
Subjt:  RTHLTEFGAPSTRCESRSSQG---SWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLP

Query:  RILIESDSSVAIAILNHEAE
         I +ESDS  AI+ L   A+
Subjt:  RILIESDSSVAIAILNHEAE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.1e-0941.67Show/hide
Query:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLL-INIGRPLPRILIESDSSVAIAILNHEAE
        W PP    W +N DASWSDS + GGIGWI R   G  + A  + +    ++K +E  AI+EGLR+L  + + RPL    IE+DS+   ++LN + E
Subjt:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLL-INIGRPLPRILIESDSSVAIAILNHEAE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]9.1e-0940Show/hide
Query:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR-----ILIESDSSVAIAILNHEAE
        W+PP    WK+NTDA+W    N GGIGWI RD  G  I A  + I  + ++  +E+ AI EGLR++     RP+ +     I +ESDS  AI +L+ + +
Subjt:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR-----ILIESDSSVAIAILNHEAE

XP_024042628.1 uncharacterized protein LOC112099434 [Citrus clementina]2.8e-1024.34Show/hide
Query:  VSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTI-SPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVG
        VS LI  D+RW E  + D F+Q D +AI++IPL    ++D +IW ++ +G +++ S        K     SSS+  NN   +              W   
Subjt:  VSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTI-SPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVG

Query:  TQISKDFSLKRHSVFTEGETNEREGEREGKRRKIWSHFFPFLCISDLGGREGDDPKACWE--QARK------SKLDPQAIIREIEILQGNRTHLTEFGAP
        T+ ++ F   +  V  +  T  +E       +K+    F  L ++            CW    AR        K   Q  +   E L      +   G  
Subjt:  TQISKDFSLKRHSVFTEGETNEREGEREGKRRKIWSHFFPFLCISDLGGREGDDPKACWE--QARK------SKLDPQAIIREIEILQGNRTHLTEFGAP

Query:  STRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDSSVAIA
            + + +  +W PP   W+K+N DA+    KN  G+G + RD+ G+ I A  K      ++   E +A+  GL+   + +   L  ++IE+DS +   
Subjt:  STRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDSSVAIA

Query:  ILNH
        ++N+
Subjt:  ILNH

TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224032.0e-0941.67Show/hide
Query:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLL-INIGRPLPRILIESDSSVAIAILNHEAE
        W PP    W +N DASWSDS + GGIGWI R   G  + A  + +    ++K +E  AI+EGLR+L  + + RPL    IE+DS+   ++LN + E
Subjt:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLL-INIGRPLPRILIESDSSVAIAILNHEAE

A0A6J1DSV1 uncharacterized protein LOC1110236084.4e-0940Show/hide
Query:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR-----ILIESDSSVAIAILNHEAE
        W+PP    WK+NTDA+W    N GGIGWI RD  G  I A  + I  + ++  +E+ AI EGLR++     RP+ +     I +ESDS  AI +L+ + +
Subjt:  WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR-----ILIESDSSVAIAILNHEAE

A0A7J6GEA5 CCHC-type domain-containing protein7.5e-0934.19Show/hide
Query:  LNYHQSDHKPILVSMEMTRSRINSRNRPRKVR--FEESWAHLEECKNIVKEIW----ARGSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILD
        L++  SDH+P++V M +        +  +K R  FEE+W   E+CK+I++E W    A GS  D   K        A+ RW E+ IR++F ++D + IL 
Subjt:  LNYHQSDHKPILVSMEMTRSRINSRNRPRKVR--FEESWAHLEECKNIVKEIW----ARGSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILD

Query:  IPLGNLQAKDDIIWGHN
        IP  + +  D I+W +N
Subjt:  IPLGNLQAKDDIIWGHN

A0A7N2LK30 Uncharacterized protein5.8e-0923.25Show/hide
Query:  VSSLIGADS-RWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVG
        V  LI A++  W  D IR++F++ + ++IL IPLG L   D ++W   + G F++   ++        K+     +++   H           N+  + G
Subjt:  VSSLIGADS-RWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVG

Query:  TQISKDFSLKRHSVFTEGETNEREGEREG--------------KRRKIWSHFFPFLCISDLGGREGDDPKACWEQARKSKLDPQAIIREIEILQGNRTHL
         +  ++F   + ++F    T++   E  G              K +++W+H      +  + G+       C+    + +               N  H+
Subjt:  TQISKDFSLKRHSVFTEGETNEREGEREG--------------KRRKIWSHFFPFLCISDLGGREGDDPKACWEQARKSKLDPQAIIREIEILQGNRTHL

Query:  TEFGAPS---TRCESRSS---QGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR
            A S    R E R S   Q  W PP  GW+K+NTD +    +   GIG IA D  G  + A  K++        +E KA+ E   S   +IG  + +
Subjt:  TEFGAPS---TRCESRSS---QGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR

Query:  ILIESDSSVAIAIL
        ++ ESDS V  + +
Subjt:  ILIESDSSVAIAIL

A0A803Q0L5 Uncharacterized protein5.8e-0924.54Show/hide
Query:  VSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGT
        V+ +   D  W    I+++F   D E IL +P    + +D I+W ++  G +T+         K+  K +SSL+E  ++ +          V V+W    
Subjt:  VSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGT

Query:  QISKDFSLKRHSVFTEG----ETNEREGEREGKRRKIWS--------------HFFPFLCISDLGGREGDDPK------ACWE--QARKSKLDPQAIIRE
           K     +H V+        TN    +R G  ++ W+                  FL       R+ D  K        W     R S +        
Subjt:  QISKDFSLKRHSVFTEG----ETNEREGEREGKRRKIWS--------------HFFPFLCISDLGGREGDDPK------ACWE--QARKSKLDPQAIIRE

Query:  IEILQGNRTHLTEF--GAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLIN
         E++   R +LTEF  G  +     R     W  P+ G  KIN DA         GIG + RDSGG  ++A    + ++     +EL+AI+ GL+   + 
Subjt:  IEILQGNRTHLTEF--GAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLIN

Query:  IGRPLPRILIESDSSVAIAILNHEAE
        I R + R  IESD   A+ ++  + E
Subjt:  IGRPLPRILIESDSSVAIAILNHEAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.6e-0935.64Show/hide
Query:  SRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGR-PLPRILIESDSSVAIAILNH
        +RSS G WRPP   W K NTDA+W+      GIGW+ R+  G   +   + + +   +K + L+A +E +R  ++++ R     ++ ESDS V I ILN+
Subjt:  SRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGR-PLPRILIESDSSVAIAILNH

Query:  E
        +
Subjt:  E

AT5G19270.1 unknown protein6.5e-0530.09Show/hide
Query:  NRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRI
        N   +  +GA   R    S   +W PP  G  K N +A W ++    G+ WIARD  G  ++      +R  +    EL+ I+  ++SL       L  +
Subjt:  NRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRI

Query:  LIESDSSVAIAIL
        +I SD   AIA L
Subjt:  LIESDSSVAIAIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCATCCCATCTAAATTATCATCAATCTGACCACAAACCTATCTTAGTCTCAATGGAGATGACAAGGTCTCGCATCAACTCTCGAAATAGGCCCAGAAAAGTGAG
ATTTGAAGAAAGTTGGGCTCACCTAGAGGAATGCAAAAATATTGTAAAAGAGATCTGGGCAAGAGGAAGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCA
TTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGAC
ATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTATTTCACCAAAATCCTTCGGTTCCACAGAAAAAACAGCAGCCAAGAACTCCTCTTCTTTGCTGGAGAATAATCA
CGAACACCACCACCACGATTGCACCGGTATTCTCTTAGGTGTGAATGTTGAGTGGCTTGTGGGAACCCAGATCTCTAAGGATTTTTCTCTGAAAAGACACTCTGTATTCA
CAGAGGGAGAGACGAACGAGAGAGAGGGCGAGAGAGAGGGAAAGAGGCGTAAGATCTGGTCCCACTTCTTCCCCTTCTTATGTATCTCTGATTTGGGTGGCAGGGAGGGA
GATGATCCTAAAGCTTGTTGGGAGCAGGCGCGAAAGTCTAAGCTAGATCCTCAAGCGATTATTAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTT
CGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAA
ATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCG
ATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTCCTCTGTTGCGATCGCCATTTTGAATCATGAAGCTGA
ATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCATCCCATCTAAATTATCATCAATCTGACCACAAACCTATCTTAGTCTCAATGGAGATGACAAGGTCTCGCATCAACTCTCGAAATAGGCCCAGAAAAGTGAG
ATTTGAAGAAAGTTGGGCTCACCTAGAGGAATGCAAAAATATTGTAAAAGAGATCTGGGCAAGAGGAAGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCA
TTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGAC
ATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTATTTCACCAAAATCCTTCGGTTCCACAGAAAAAACAGCAGCCAAGAACTCCTCTTCTTTGCTGGAGAATAATCA
CGAACACCACCACCACGATTGCACCGGTATTCTCTTAGGTGTGAATGTTGAGTGGCTTGTGGGAACCCAGATCTCTAAGGATTTTTCTCTGAAAAGACACTCTGTATTCA
CAGAGGGAGAGACGAACGAGAGAGAGGGCGAGAGAGAGGGAAAGAGGCGTAAGATCTGGTCCCACTTCTTCCCCTTCTTATGTATCTCTGATTTGGGTGGCAGGGAGGGA
GATGATCCTAAAGCTTGTTGGGAGCAGGCGCGAAAGTCTAAGCTAGATCCTCAAGCGATTATTAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTT
CGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAA
ATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCG
ATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTCCTCTGTTGCGATCGCCATTTTGAATCATGAAGCTGA
ATAG
Protein sequenceShow/hide protein sequence
MEASHLNYHQSDHKPILVSMEMTRSRINSRNRPRKVRFEESWAHLEECKNIVKEIWARGSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDD
IIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGTQISKDFSLKRHSVFTEGETNEREGEREGKRRKIWSHFFPFLCISDLGGREG
DDPKACWEQARKSKLDPQAIIREIEILQGNRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKA
IVEGLRSLLINIGRPLPRILIESDSSVAIAILNHEAE